Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0949
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    29   1.4  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   4.1  
01_06_1128 - 34724469-34724699,34726103-34726213,34726301-347264...    27   5.5  
09_03_0085 - 12209697-12210457,12212823-12213255                       26   9.6  
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    26   9.6  
01_06_1183 - 35176780-35177266,35179631-35181093                       26   9.6  

>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 168 VMG*VLLLDQNQSTEGLAXEVVNFDESG*LLQIAWSSTGDASFKCAALSTFDGSFCDYHG 347
           V G V  +  N+S E L+ + V F E   +   +    GD  F   +L  F  + CDY G
Sbjct: 188 VEGFVSEMKLNKSEETLSRKFVAFQEPSEIACYSRIEGGDVYFDDRSLRLFKRNICDYVG 247


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 142 NTCNQNSDQ*WDECFY*IKTNRRR 213
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


>01_06_1128 -
           34724469-34724699,34726103-34726213,34726301-34726409,
           34726517-34726581,34726661-34726838,34726918-34726997,
           34727838-34727961,34728064-34728172,34728299-34728461
          Length = 389

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 92  FLRSYSVTWITVVILELIHAIRTLTSDGMSAF 187
           F+R Y  TW  +   +L+  + TLT    S F
Sbjct: 241 FIRCYDCTWTLIDEYDLVDPVHTLTPPEESGF 272


>09_03_0085 - 12209697-12210457,12212823-12213255
          Length = 397

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 282 GDASFKCAALSTFDGSFCDYH 344
           G A  KCA L+     FC YH
Sbjct: 117 GGAERKCATLAEIFSRFCSYH 137


>05_03_0449 -
           14161812-14162902,14163121-14163153,14164248-14164457,
           14166348-14167011,14167129-14167287,14167449-14167563,
           14167672-14167867,14167965-14168286,14168695-14168865,
           14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -3

Query: 222 TRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQVTE*DLRN 91
           ++GPP+  +++++A+   L  VL AC   R+++   +T   LRN
Sbjct: 668 SQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLIT--GLRN 709


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 217 RPSVD-WF*SNKSTHPITGQ 161
           R S+D WF S KST P TGQ
Sbjct: 301 RESIDRWFSSGKSTCPKTGQ 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,838,660
Number of Sequences: 37544
Number of extensions: 149765
Number of successful extensions: 309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)