Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0949
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.11 
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.20 
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 29   1.1  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 29   1.1  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.3  
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                27   5.7  
SB_17785| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +3

Query: 3   ICLSQXLSHACLSASRIKAIPRMA 74
           ICLSQ LSHACLS S      RMA
Sbjct: 138 ICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +3

Query: 3   ICLSQXLSHACLSASRIKAIPRMA 74
           ICLSQ LSHACLS S      RMA
Sbjct: 114 ICLSQRLSHACLSISTRTVKLRMA 137


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 1   LYACLKX*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 135
           L  CL   A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 1    LYACLKX*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 135
            L  CL   A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 59  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 175
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 248  WITFADRMVKYRRRIFQM 301
            W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 20  IKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIR-TLTSDGMSAFIRS 196
           +KPC S   P      + +++        +VT+   V  + IH  R TL+SD M A   S
Sbjct: 35  LKPCSSNYAP---SEQSYNVFLAPLYTRATVTYKGPVQSQGIHLNRYTLSSDNMKANNIS 91

Query: 197 KPIDG 211
           +P+DG
Sbjct: 92  RPLDG 96


>SB_17785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -1

Query: 149 HVLALELPQLSK 114
           HVLALELP+LSK
Sbjct: 108 HVLALELPRLSK 119


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 228 VVNFDESG*LLQIAWSSTGDASFKCAALSTF 320
           V +F  SG + ++ WS  GD    C + +TF
Sbjct: 368 VHSFQGSGGIFEVQWSPRGDKLAACFSNNTF 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,253,507
Number of Sequences: 59808
Number of extensions: 172802
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)