Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0949
         (350 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1481|AAN12009.1|  804|Drosophila melanogaster CG32353-P...    28   2.9  
AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC...    27   5.1  
BT028833-1|ABI34214.2|  158|Drosophila melanogaster RT01054p pro...    27   6.7  
AE014297-3190|AAF56025.1|  158|Drosophila melanogaster CG5264-PA...    27   6.7  
AJ132670-1|CAA10727.1|  158|Drosophila melanogaster homeodomain ...    27   8.9  

>AE014296-1481|AAN12009.1|  804|Drosophila melanogaster CG32353-PA
           protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 255 VIQIHQN*RLRTRGPPSIGFDL 190
           ++QI  N +  TR PPSIG DL
Sbjct: 353 IVQIRDNIQAETRRPPSIGGDL 374


>AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC
            protein.
          Length = 4699

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 183  LLLDQNQSTEGLAXEVVNFDESG*LLQIAWSSTGDASFKCAAL 311
            +LL+Q Q  EGLA ++VN        Q+ W+S  +A+ +   L
Sbjct: 2326 VLLEQQQRVEGLAYDIVN-------EQLFWTSNNNATIRSVEL 2361


>BT028833-1|ABI34214.2|  158|Drosophila melanogaster RT01054p
           protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 292 DASPVLDHAICKSYPDSSKLTTSXARPSVDWF*SNKS 182
           D S V DH+   SY D +KL T+    + D +  N++
Sbjct: 31  DCSYVYDHSASSSYADYNKLETNWCNEANDQWLQNEA 67


>AE014297-3190|AAF56025.1|  158|Drosophila melanogaster CG5264-PA
           protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 292 DASPVLDHAICKSYPDSSKLTTSXARPSVDWF*SNKS 182
           D S V DH+   SY D +KL T+    + D +  N++
Sbjct: 31  DCSYVYDHSASSSYADYNKLETNWCNEANDQWLQNEA 67


>AJ132670-1|CAA10727.1|  158|Drosophila melanogaster homeodomain
           protein protein.
          Length = 158

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 292 DASPVLDHAICKSYPDSSKLTTSXARPSVDWF*SNKS 182
           D S V DH+   SY D +KL T+    + D +  N++
Sbjct: 31  DCSYVYDHSASSSYADYNKLETNWCTEANDQWLQNEA 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,166
Number of Sequences: 53049
Number of extensions: 246218
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)