Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0949
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   2.2  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    26   6.6  

>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 59  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 163
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 101 SYSVTWITVVILELIHAIRTLTSDGMS 181
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 86  TDILSHSRYRLNTACTETC 30
           T++L H+R+ L  AC E C
Sbjct: 245 TEVLKHARFCLGLACCERC 263


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 196  KTNRRRASRXKSLILMNLDNFCRSHG 273
            K N +R +R + L++  + NFC+ HG
Sbjct: 1229 KDNLKR-TRKRKLLVSTIPNFCKEHG 1253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,470,996
Number of Sequences: 27780
Number of extensions: 126470
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)