Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0949
(350 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 1.4
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 4.2
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 5.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 5.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 5.6
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 20 7.4
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 20 7.4
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 20 7.4
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 20 7.4
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 20 9.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 20 9.8
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 20 9.8
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 1.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 32 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 166
M C P DT +Y+F R Y + T VI + + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 1.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 226 KSLILMNLDNFCRSHGQVPATHLSNVLPYQLSMVVSATTM 345
+ L +NL + CR HG T LP + S+ T+
Sbjct: 431 RELEAVNLGSACRIHGSPATTAAPPQLPTEESVDALCNTL 470
Score = 19.8 bits (39), Expect = 9.8
Identities = 7/38 (18%), Positives = 20/38 (52%)
Frame = +1
Query: 4 YACLKX*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
Y C + ++ +RR + +++++P + +S+L
Sbjct: 220 YTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.0 bits (42), Expect = 4.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 4 YACLKX*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
Y C + LRR + ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.6 bits (41), Expect = 5.6
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = -3
Query: 246 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 139
I+Q L + +IG+ + + +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 5.6
Identities = 7/38 (18%), Positives = 20/38 (52%)
Frame = +1
Query: 4 YACLKX*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
Y C + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 5.6
Identities = 7/38 (18%), Positives = 20/38 (52%)
Frame = +1
Query: 4 YACLKX*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 117
Y C + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 38 QCKPY*GDTANGSIYQFWFLRSY 106
+C Y D + +YQ++ LR Y
Sbjct: 140 RCLHYTVDKSKPKVYQWFDLRKY 162
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 38 QCKPY*GDTANGSIYQFWFLRSY 106
+C Y D + +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 38 QCKPY*GDTANGSIYQFWFLRSY 106
+C Y D + +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 127 GNSRANTCN 153
GNSRANT N
Sbjct: 131 GNSRANTYN 139
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 19.8 bits (39), Expect = 9.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 204 IGFDLIKALIPSLVRVLIACIS 139
+GF ++ IPS++ V+I+ +S
Sbjct: 231 MGFFMMDYYIPSILIVVISWVS 252
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 19.8 bits (39), Expect = 9.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 159 VLIACISSRITTVIQVTE*DLRNQN*YIE 73
VL++ +S+ T ++ LRN++ YI+
Sbjct: 438 VLLSPEASKATEAVEFIAEHLRNEDLYIQ 466
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 19.8 bits (39), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 331 KLPSKVDKAAHLKDASPVLDHAI 263
KL + ++ AH+KD+ VL A+
Sbjct: 280 KLINAENETAHIKDSLIVLTSAL 302
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,898
Number of Sequences: 438
Number of extensions: 1702
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8060325
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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