Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0949
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.50 
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   3.5  
At4g38560.1 68417.m05459 expressed protein                             27   4.6  
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    26   6.1  
At2g24693.1 68415.m02949 Expressed protein                             26   6.1  
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP...    26   8.1  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 247 DSSKLTTSXARPSVDWF*SNKSTHPITGQSSD 152
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -3

Query: 276 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 115
           LT  + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  GDTANGSIYQFWFLRSYSVTWITVVILEL 142
           GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 219 RGPPSIGFDLIKALIPSLVRVL 154
           RG PS  FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249


>At2g24693.1 68415.m02949 Expressed protein
          Length = 73

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 267 AWSSTGDASFKCAALSTFDGSFC 335
           AW    + + KCAAL T  G  C
Sbjct: 38  AWKGAKECNAKCAALGTTRGGVC 60


>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
           TBP-interacting protein TIP120 GI:1799570 from [Rattus
           norvegicus]
          Length = 1219

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 199 TNRRRASRXKSLILMNLDNFCRSHGQVPATHLSNVLPYQLSMVVSAT 339
           +NR   S      +  +   CR+ G    THL N +P  ++   SA+
Sbjct: 219 SNRNAKSEITRTNIQMIGALCRAVGYRFGTHLGNTVPVLINYCTSAS 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,062,224
Number of Sequences: 28952
Number of extensions: 119724
Number of successful extensions: 263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)