Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0942
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)                    30   1.1  
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   29   1.5  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   3.4  
SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   6.0  
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)            27   6.0  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
          Length = 609

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 170 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAXLDGFS 30
           P +LF+    G I  +  ++LFV+ S   +V    +++F A  DG S
Sbjct: 48  PVVLFVASSDGGIVFNVPVVLFVASSDGGIVFNVLVVLFVASSDGGS 94



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 170 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAXLDG 36
           P +LF     G I  +  ++LFV+ S   +V    +++F A  DG
Sbjct: 31  PVVLFRGSSDGGILFNVPVVLFVASSDGGIVFNVPVVLFVASSDG 75


>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 163 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 333
           I   + ++MR+ R +  R ++ +LQE   E++R+D    E++ L    I +D   KD L
Sbjct: 44  IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 357 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 253
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 58  IIIEKYYTRLTLDFDTNKRI--CEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRG 219
           II   + T+L       K I  C E   + ++P+  ++     H+M R +H  +RG
Sbjct: 48  IITTNFRTKLATTLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNHVMTRSQHRILRG 103


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 121 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 300
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+   +  EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514

Query: 301 I 303
           +
Sbjct: 515 M 515


>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
          Length = 163

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
 Frame = +1

Query: 145 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 315
           K LR ++  FA+H  RRLR + +R     K+ +     ++ Y P VS A+   II ++D 
Sbjct: 56  KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114

Query: 316 DTKDMLKMLD----FNNINGLQLTQPATQ 390
             +  + + D      ++N   + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 73  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 162
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 184 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 327
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,842
Number of Sequences: 59808
Number of extensions: 205981
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)