BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0942 (475 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 141 3e-34 At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 140 6e-34 At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 140 6e-34 At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 138 1e-33 At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 138 2e-33 At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.17 At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 2.1 At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 2.1 At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.8 At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.8 At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 4.9 At4g14180.1 68417.m02189 expressed protein ; expression supporte... 27 8.6 At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 8.6 At1g15030.1 68414.m01796 expressed protein 27 8.6 >At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) Length = 140 Score = 141 bits (341), Expect = 3e-34 Identities = 65/116 (56%), Positives = 92/116 (79%) Frame = +1 Query: 34 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 213 K K+++ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ V Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 Query: 214 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 381 RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ +G+ +P Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122 >At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ribosomal protein S17, Lycopersicon esculentum, EMBL:AF161704 Length = 141 Score = 140 bits (338), Expect = 6e-34 Identities = 65/116 (56%), Positives = 91/116 (78%) Frame = +1 Query: 34 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 213 K K+++ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ V Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 Query: 214 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 381 RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122 >At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ribosomal protein S17, Lycopersicon esculentum, EMBL:AF161704 Length = 141 Score = 140 bits (338), Expect = 6e-34 Identities = 65/116 (56%), Positives = 91/116 (78%) Frame = +1 Query: 34 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 213 K K+++ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ V Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 Query: 214 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 381 RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122 >At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) Length = 141 Score = 138 bits (335), Expect = 1e-33 Identities = 65/116 (56%), Positives = 90/116 (77%) Frame = +1 Query: 34 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 213 K K+++ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ V Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 Query: 214 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 381 RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ P Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122 >At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon esculentum] Length = 140 Score = 138 bits (333), Expect = 2e-33 Identities = 64/111 (57%), Positives = 90/111 (81%) Frame = +1 Query: 34 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 213 K K+++ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ V Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 Query: 214 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 366 RGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML L ++I G+ Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117 >At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 790 Score = 32.3 bits (70), Expect = 0.17 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 178 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 333 T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719 >At5g40530.2 68418.m04918 expressed protein contains Pfam profile PF05148: Protein of unknown function (DUF691) Length = 301 Score = 28.7 bits (61), Expect = 2.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 380 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 273 GC R +K+ +F+ LVS + S+++C ++TS Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177 >At5g40530.1 68418.m04919 expressed protein contains Pfam profile PF05148: Protein of unknown function (DUF691) Length = 287 Score = 28.7 bits (61), Expect = 2.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 380 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 273 GC R +K+ +F+ LVS + S+++C ++TS Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177 >At2g46020.2 68415.m05725 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2193 Score = 28.3 bits (60), Expect = 2.8 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 85 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 258 LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737 >At2g46020.1 68415.m05724 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2192 Score = 28.3 bits (60), Expect = 2.8 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 85 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 258 LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737 >At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 612 Score = 27.5 bits (58), Expect = 4.9 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 226 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 318 +K EEE R+ YVP+ S + HD+ E + + Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538 >At4g14180.1 68417.m02189 expressed protein ; expression supported by MPSS Length = 1268 Score = 26.6 bits (56), Expect = 8.6 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 55 KIIIEKYYTR-LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISI 228 K ++E+YY++ + L D IC + P + A T L LRHS + +S+ Sbjct: 420 KKMLERYYSQEMGLFPDAFAIICSVFVSLMKTPSFGETADVLTSLQESLRHSILASLSL 478 >At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7) identical to SP|Q9SMV7 DNA mismatch repair protein MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis thaliana}; GC donor splice site at exon 11 Length = 1109 Score = 26.6 bits (56), Expect = 8.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 77 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 169 + D +L +IK V+ S S LP+LLG K+L Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665 >At1g15030.1 68414.m01796 expressed protein Length = 360 Score = 26.6 bits (56), Expect = 8.6 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +2 Query: 137 FLPSLLGIKLL-DLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCL 283 ++PSL GI++ D+ + + R+ EES S+FR S G ++ S++ L Sbjct: 119 YVPSLSGIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERGL 168 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,230,618 Number of Sequences: 28952 Number of extensions: 149912 Number of successful extensions: 504 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 491 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 504 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 811731120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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