Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0941
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 192 2e-50
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 192 2e-50
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 48 4e-07
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 4.3
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 5.7
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 24 7.6
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 10.0
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 24 10.0
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 192 bits (467), Expect = 2e-50
Identities = 88/133 (66%), Positives = 111/133 (83%)
Frame = +1
Query: 1 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 180
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 181 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 360
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 361 CEPKKFGGPGARA 399
EPKKFGG GARA
Sbjct: 121 MEPKKFGGHGARA 133
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 192 bits (467), Expect = 2e-50
Identities = 88/133 (66%), Positives = 111/133 (83%)
Frame = +1
Query: 1 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 180
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 181 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 360
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 361 CEPKKFGGPGARA 399
EPKKFGG GARA
Sbjct: 121 MEPKKFGGHGARA 133
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 48.4 bits (110), Expect = 4e-07
Identities = 40/125 (32%), Positives = 58/125 (46%)
Frame = +1
Query: 22 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 201
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 202 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 381
GGG Q A+ AISK+LI + E S K+ V D ++ D R+ E KK G
Sbjct: 71 GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119
Query: 382 GPGAR 396
P AR
Sbjct: 120 QPKAR 124
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 88 RLHAAFHDHACNTQLRWRFS 29
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 231 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 320
Y YF G D PE C QRH S
Sbjct: 42 YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 127 TAAVWAQPSPMGARLHAAFHDHACNTQLR 41
T +V + P AR AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.8 bits (49), Expect = 10.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 141 TYPFARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLLPEICRRSLK 296
T F+R GKI++ +S G W ++TSY R PE R+ ++
Sbjct: 984 TISFSRSGKIIFKSTRSKLHGIW-------HETSYKMQEIRDNPECARQEME 1028
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 277 YVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 384
++DEA+ K+I + Y +LL P P K GG
Sbjct: 226 FLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,289
Number of Sequences: 5004
Number of extensions: 30782
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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