Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0941
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 198 2e-51
11_01_0155 - 1287003-1287452 198 2e-51
03_06_0097 - 31632238-31632525,31633386-31633769 39 0.001
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.002
07_03_0227 - 15398371-15398925 30 0.59
11_01_0523 - 4109070-4109984,4110532-4110936 28 3.1
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 3.1
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 4.1
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 27 7.2
11_06_0598 - 25391923-25393197 26 9.5
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 26 9.5
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 26 9.5
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 26 9.5
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 26 9.5
01_06_0990 - 33623085-33623615,33624138-33624278 26 9.5
>12_01_0152 - 1168928-1169377
Length = 149
Score = 198 bits (482), Expect = 2e-51
Identities = 87/130 (66%), Positives = 110/130 (84%)
Frame = +1
Query: 10 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 189
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 190 VTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEP 369
+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEP
Sbjct: 73 IRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEP 132
Query: 370 KKFGGPGARA 399
KKFGG GARA
Sbjct: 133 KKFGGRGARA 142
>11_01_0155 - 1287003-1287452
Length = 149
Score = 198 bits (482), Expect = 2e-51
Identities = 87/130 (66%), Positives = 110/130 (84%)
Frame = +1
Query: 10 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 189
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 190 VTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEP 369
+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEP
Sbjct: 73 IRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEP 132
Query: 370 KKFGGPGARA 399
KKFGG GARA
Sbjct: 133 KKFGGRGARA 142
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 39.1 bits (87), Expect = 0.001
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 174
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 175 MVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 354
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 355 RRCEPKKFGGPGAR 396
R E KK G AR
Sbjct: 202 RIVERKKAGLKKAR 215
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +1
Query: 22 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 201
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 202 GGGHVAQVYAIRQAISKAL 258
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.59
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 142 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 32
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 202 GGGHVAQVYAIRQAISKALIAFY 270
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 85 NGRPLDLVEPRLLQYKLQEPILLL 156
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 96 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 10
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 157 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIA 264
GK+ + R++V GGG+ Q+ A IS+A ++
Sbjct: 118 GKQSNELGHARISVTGGGYFHQLLAEHTIISEAFLS 153
>11_06_0598 - 25391923-25393197
Length = 424
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 383 PPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 249
PP L S TS L + T + ++ S+TY AIR F
Sbjct: 260 PPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 190 VTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKD 312
VT G G VA + R ++ L+ + + V E +KEI D
Sbjct: 379 VTAAGSGCVAALSVERYLVANDLLVEFHQPVREEKEKEITD 419
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 195 CHSDV--NHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLA 55
CH + + E+F A + R + F+ +SGL Q P +H M+T A
Sbjct: 365 CHQVILASRSEYFKA-RLSRNMDFLEVKSGLQSTQSLPFLEEHDMSTEA 412
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 106 PSPMGARLHAAFHDHACNTQLRWRFSYVRILGR 8
PSP A+ AA A N LRWR +L R
Sbjct: 7 PSPPPAQASAAEASGASNASLRWRILRRALLAR 39
>02_05_0056 +
25461423-25461708,25461986-25462026,25466047-25466083,
25466451-25466594,25466882-25466974,25467067-25467155,
25467241-25467537,25467629-25467765,25467860-25467952,
25468061-25468166,25468243-25468395
Length = 491
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 190 VTVKGGGHVAQVYAIRQAIS 249
VT++G GH ++A RQA+S
Sbjct: 455 VTIRGAGHEVPLHAPRQALS 474
>01_06_0990 - 33623085-33623615,33624138-33624278
Length = 223
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +1
Query: 34 TATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGH 213
T AV++ G L +G PR + + I + ++ +VD R GGGH
Sbjct: 116 TQHAVSWADDGEWELPESGEE-GTAPPRSGAHMTEVTIRITKRQLQELVDKRAAAAGGGH 174
Query: 214 VAQVYAIRQAISKALIA 264
VY + + L+A
Sbjct: 175 GYHVYRKSRRSAAELLA 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,836
Number of Sequences: 37544
Number of extensions: 237215
Number of successful extensions: 670
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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