Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0941
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 7e-39
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10) 33 0.086
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36) 32 0.15
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 32 0.20
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 27 5.6
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 27 7.4
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 26 9.8
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 156 bits (378), Expect = 7e-39
Identities = 72/90 (80%), Positives = 83/90 (92%)
Frame = +1
Query: 130 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 309
K++EPILLLGKE+F VDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70
Query: 310 DILVQYDRSLLVADPRRCEPKKFGGPGARA 399
DILVQYDRSLLVADPRR E KKFGGPGAR+
Sbjct: 71 DILVQYDRSLLVADPRRTEAKKFGGPGARS 100
>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 42.3 bits (95), Expect = 1e-04
Identities = 34/99 (34%), Positives = 48/99 (48%)
Frame = +1
Query: 22 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 201
G +K + A A+ +G G + VN RP RL Q K Q + D V
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396
Query: 202 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 318
GGG Q AIR AIS+AL+ F + ++ E ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434
>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
Length = 119
Score = 33.1 bits (72), Expect = 0.086
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 256 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 366
++AF QKY+D +KE +Q+ + +LV+ R CE
Sbjct: 53 VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89
>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
Length = 391
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 181 DIRVTVKGGGHVAQVYAIRQAISKALIAF 267
DI+V V GGG Q AI+ I++ALI F
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF 351
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 31.9 bits (69), Expect = 0.20
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 207 WSCSTSLRYQTSYFK-GSDRLLPEICR 284
WSCSTS+R +TS FK GS LL + R
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARLIR 181
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 30.7 bits (66), Expect = 0.46
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +1
Query: 199 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 369
K GGH++Q + I Q K L A + K + DE K++ K+I V+ +RS + ++ EP
Sbjct: 91 KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150
Query: 370 K 372
+
Sbjct: 151 E 151
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 174 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 88
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 66 SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 179
SW A K+ P G G ++ +G Y R G+ YG
Sbjct: 19 SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 148 LLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 267
L +GKEK +M GGH+ + + + Q K F
Sbjct: 463 LWIGKEKNTMTPSSAPAMPGGHLVRSFKVEQVADKVFKTF 502
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 138 LKFVLQQSGLNQVQWAPVYT 79
LK SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217
>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 26.6 bits (56), Expect = 7.4
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +1
Query: 118 LLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 297
+L+Y +PI + + S G A R+A + L F + +
Sbjct: 346 VLRYNFVDPITGVHTQHISTAQYSKRTAGDSQGAPPELPRRADLEGLARFKPGEASQC-Q 404
Query: 298 KEIKDILVQYDRSLLVADPR 357
++DI+V Y+RS+L+A R
Sbjct: 405 VTLRDIMVCYERSVLLATQR 424
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 101 TWLSPDCCSTNFRNLSFCSARKNSL 175
TW+ P C S+NF + S ++ NS+
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI 740
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,278,893
Number of Sequences: 59808
Number of extensions: 256472
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -