Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0941
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 210 3e-55
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.30
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 0.53
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 0.53
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 28 2.1
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 28 2.1
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 28 2.1
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 28 2.1
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 2.8
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 2.8
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 2.8
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 2.8
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 28 2.8
U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 6.5
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 26 8.7
U00046-2|AAN65304.1| 860|Caenorhabditis elegans Temporarily ass... 26 8.7
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 26 8.7
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 26 8.7
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 26 8.7
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 26 8.7
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 26 8.7
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 210 bits (513), Expect = 3e-55
Identities = 92/133 (69%), Positives = 118/133 (88%)
Frame = +1
Query: 1 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 180
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 181 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 360
DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I YD+SLLVADPRR
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124
Query: 361 CEPKKFGGPGARA 399
E KKFGGPGARA
Sbjct: 125 RESKKFGGPGARA 137
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.30
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 277 YVDEASKKEIKDILVQYDRSLLVADPRRCE 366
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.53
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -2
Query: 216 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 37
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 36 G 34
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.53
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -2
Query: 216 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 37
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 36 G 34
G
Sbjct: 208 G 208
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 324
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 324
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 324
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 324
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 210 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 112
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 150 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 269
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 438
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 150 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 269
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 701
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 210 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 112
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 156 RQGKILYG*HQSDSQ---GWWSCSTSLRYQTSYFKGSDRLLPEIC 281
R+ +I+ H + GW S L Y+T+Y + L P+ C
Sbjct: 259 RENEIIINIHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303
>U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical
protein C42D4.2 protein.
Length = 500
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 205 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPK 372
GG VA + + ++ L + +Q+Y+ +S + +Q +R+ A+ C PK
Sbjct: 129 GGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTYRFAEHANCLPK 183
>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
F16D3.4 protein.
Length = 1232
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 73 MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGG 210
++ + P+D + R + ++L+ P+L LG E + + + + V GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
F28B4.3 protein.
Length = 2229
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEA 291
I++TV G G QVY +++AL FY Y ++
Sbjct: 1138 IQLTVFGYGTTIQVYNGNGVLAEALELFYDDYTGQS 1173
>U00046-2|AAN65304.1| 860|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform c protein.
Length = 860
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 85 NGRPLDLVEPRLLQYKLQEPILLLGKEKFS 174
NGRPLDL R + + + L EKFS
Sbjct: 584 NGRPLDLYSERYMSISPEAVVRLELNEKFS 613
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
gene nameprotein 152, isoform a protein.
Length = 2560
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 85 NGRPLDLVEPRLLQYKLQEPILLLGKEKFS 174
NGRPLDL R + + + L EKFS
Sbjct: 2255 NGRPLDLYSERYMSISPEAVVRLELNEKFS 2284
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 337 LLVADPRRCEPKKFGGPGARA 399
LL DPR+ E K PGARA
Sbjct: 365 LLTLDPRKNERSKVNQPGARA 385
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 98 WTWLSPDCCSTNFRNLSFCSARKNSLWLTSE*QSRVVVM*HKFTLSD 238
WT S D C N +N + R N WL++ ++V + H+ +L D
Sbjct: 74 WTGKSYDFCYRNPKNATLVGKRFNCTWLSTLEDLKLVGL-HEQSLVD 119
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 85 NGRPLDLVEPRLLQYKLQEPILLLGKEKFS 174
NGRPLDL R + + + L EKFS
Sbjct: 2197 NGRPLDLYSERYMSISPEAVVRLELNEKFS 2226
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 85 NGRPLDLVEPRLLQYKLQEPILLLGKEKFS 174
NGRPLDL R + + + L EKFS
Sbjct: 2379 NGRPLDLYSERYMSISPEAVVRLELNEKFS 2408
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,623,057
Number of Sequences: 27780
Number of extensions: 182094
Number of successful extensions: 498
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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