Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0941
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 206 6e-54
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 204 2e-53
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 204 2e-53
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 45 2e-05
At1g43570.1 68414.m05001 hypothetical protein 31 0.21
At5g40090.1 68418.m04863 disease resistance protein-related cont... 27 3.5
At3g24255.1 68416.m03045 expressed protein 27 3.5
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 27 4.6
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 27 4.6
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 6.1
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 26 8.0
At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family ... 26 8.0
At2g43180.4 68415.m05365 expressed protein 26 8.0
At2g43180.2 68415.m05364 expressed protein 26 8.0
At2g43180.1 68415.m05362 expressed protein 26 8.0
At2g41680.1 68415.m05149 thioredoxin reductase, putative / NADPH... 26 8.0
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 26 8.0
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 206 bits (502), Expect = 6e-54
Identities = 90/132 (68%), Positives = 117/132 (88%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 363
+R+ GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127
Query: 364 EPKKFGGPGARA 399
E KKFGGPGARA
Sbjct: 128 ESKKFGGPGARA 139
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 204 bits (498), Expect = 2e-53
Identities = 90/132 (68%), Positives = 117/132 (88%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 363
+R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRC
Sbjct: 68 MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127
Query: 364 EPKKFGGPGARA 399
EPKKFGG GAR+
Sbjct: 128 EPKKFGGRGARS 139
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 204 bits (497), Expect = 2e-53
Identities = 89/132 (67%), Positives = 117/132 (88%)
Frame = +1
Query: 4 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 183
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67
Query: 184 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 363
+R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRC
Sbjct: 68 MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127
Query: 364 EPKKFGGPGARA 399
EPKKFGG GAR+
Sbjct: 128 EPKKFGGRGARS 139
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +1
Query: 22 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 201
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 202 GGGHVAQVYAIRQAISKAL 258
GGG QV AI+ IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 362 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 255
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At5g40090.1 68418.m04863 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 385
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +1
Query: 157 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 303
G+E++ +++ K GGH+ +V+ + +A + ++ D +KE
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEATDDKGLEEWETAADIVERKE 358
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 359 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACL 234
R G T++ LS+ R+ LIS S T FW A R AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 142 PILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAIS 249
P+L L + K S V+ RV V+ GH+A +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 145 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 279
++ +G E+ V I ++ GGGH A AIR A I F KY
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +2
Query: 95 HWTWLSPDCCSTNFRNLSFCSARKNSLW 178
+W W DC F +L F +N W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 229 AIRQAISKALIAFYQK--YVDEASKKEIKDIL 318
A + L+ FY K Y DE + EIKDIL
Sbjct: 97 AEESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128
>At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family
protein similar to Sin3 associated polypeptide p18
(2HOR0202) (Swiss-Prot:O00422) [Homo sapiens]
Length = 152
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 160 KEKFSMVDIRVTVKGGGH-VAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 318
+EK + +RV K GGH ++ YA+R K + Y +AS +E+ D++
Sbjct: 35 REKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYT--WKDASLRELTDLV 86
>At2g43180.4 68415.m05365 expressed protein
Length = 466
Score = 26.2 bits (55), Expect = 8.0
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = +1
Query: 94 PLDLVEPRLLQYKLQE-PILLLGKEKFSMVDIRVTVKGG-----GHVAQVYAIRQAISKA 255
PL+L E + YKL PI L+G +M D + +KGG G +A + I + +
Sbjct: 289 PLELEE---IGYKLVAYPISLIGVSIQAMQDALLAIKGGRIPPPGSMASLEEIGEILGFD 345
Query: 256 LIAFYQK-YVDEASKKEIKDILVQYDRSLLVADPRRCE 366
+K Y +S +E+ V ++ + DP + E
Sbjct: 346 TYEEEEKRYATSSSDREVSSSSVYRNQRVAKDDPEQRE 383
>At2g43180.2 68415.m05364 expressed protein
Length = 451
Score = 26.2 bits (55), Expect = 8.0
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = +1
Query: 94 PLDLVEPRLLQYKLQE-PILLLGKEKFSMVDIRVTVKGG-----GHVAQVYAIRQAISKA 255
PL+L E + YKL PI L+G +M D + +KGG G +A + I + +
Sbjct: 289 PLELEE---IGYKLVAYPISLIGVSIQAMQDALLAIKGGRIPPPGSMASLEEIGEILGFD 345
Query: 256 LIAFYQK-YVDEASKKEIKDILVQYDRSLLVADPRRCE 366
+K Y +S +E+ V ++ + DP + E
Sbjct: 346 TYEEEEKRYATSSSDREVSSSSVYRNQRVAKDDPEQRE 383
>At2g43180.1 68415.m05362 expressed protein
Length = 479
Score = 26.2 bits (55), Expect = 8.0
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = +1
Query: 94 PLDLVEPRLLQYKLQE-PILLLGKEKFSMVDIRVTVKGG-----GHVAQVYAIRQAISKA 255
PL+L E + YKL PI L+G +M D + +KGG G +A + I + +
Sbjct: 289 PLELEE---IGYKLVAYPISLIGVSIQAMQDALLAIKGGRIPPPGSMASLEEIGEILGFD 345
Query: 256 LIAFYQK-YVDEASKKEIKDILVQYDRSLLVADPRRCE 366
+K Y +S +E+ V ++ + DP + E
Sbjct: 346 TYEEEEKRYATSSSDREVSSSSVYRNQRVAKDDPEQRE 383
>At2g41680.1 68415.m05149 thioredoxin reductase, putative /
NADPH-dependent thioredoxin reductase, putative The last
2 exons encode thioredoxin. There is an EST match to
exons 5-7, and the distance between exon 7 and exon 8 is
only 90bp. It is unlikely this is two separate genes,
but more likely a hybrid protein.
Length = 529
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 190 VTVKGGGHVAQVYAIRQAIS-KALIAFYQKYVDEASKK-EIKDILVQYDRSL 339
VT G G +A + A R S L+ F+Q +EA K+ +D+ ++D +L
Sbjct: 374 VTAAGSGCIAALSAERYLTSNNLLVEFHQPQTEEAKKEFTQRDVQEKFDITL 425
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 154 LGKEKFSMVDIRVTVKGGGHVAQVYAIRQA 243
+G E+ V I ++ GGGH A AIR A
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDA 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,146,312
Number of Sequences: 28952
Number of extensions: 172835
Number of successful extensions: 494
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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