Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0940
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.42 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   0.96 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   1.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   2.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.9  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.8  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 178 KLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSL 44
           ++  VTN  S    P T+S+ +  FD++  + ++ DSF+ + + L
Sbjct: 559 EVETVTNDPSFSQQPGTHSRILRNFDAISSIDSIPDSFSDSAVDL 603


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 262 KHFSPPRRHVLDLRWPSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKTL 414
           KH  P  +  L   W    S   + L++ + T++ L  NQ+ +S+   +TL
Sbjct: 430 KHLVPENKSKLQYVWQKKESLPYANLTSASNTHFFLSENQNDTSERLTRTL 480


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 18  CCLLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPP 197
           C  +YV+   EST    E  RL +I   SN++   E +T  G    R        +   P
Sbjct: 96  CEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISP 155

Query: 198 EKTLAPQPTVKGLLSR 245
           E  L P+  ++ LL +
Sbjct: 156 E-ILLPKRRLEHLLQQ 170


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 215 AADGEGPTVQIREPGSSTFRPQEDTFWIFGGHPQTPRDQVV*AR*TEH 358
           AA    P +Q ++   + + PQ+  +     +PQ P+  +V A+ TEH
Sbjct: 218 AASSSAPPMQYQQ---TAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEH 262


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 328 PSGLSTMNRTYYALFWNQDSSSKCEL 405
           PSG S + +T YAL W   S +K  +
Sbjct: 530 PSGTSFVVKTLYALSWAHSSKTKLNI 555


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 182 ADQAARKDPSAAADGEGPTVQIREPGSSTFRP 277
           AD  +   P AA   +GP  + +EP  S+  P
Sbjct: 526 ADVLSPISPDAALQSDGPLKKAKEPEESSITP 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,623
Number of Sequences: 5004
Number of extensions: 48682
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)