Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0940
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 30 0.97
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 30 1.3
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 30 1.3
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 30 1.3
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 29 2.2
07_01_0036 + 298626-299573,299973-300239 28 3.9
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 28 3.9
01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417 28 5.2
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593 27 6.8
09_06_0127 + 21019266-21019670 27 6.8
09_06_0041 - 20440266-20441381 27 6.8
09_04_0164 + 15265878-15268701,15268782-15269200 27 6.8
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279... 27 9.0
04_03_0368 + 15004949-15005659,15005789-15005848 27 9.0
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 9.0
03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463... 27 9.0
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612 27 9.0
02_01_0035 - 220036-221419,222050-222801 27 9.0
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 30.3 bits (65), Expect = 0.97
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +2
Query: 185 DQAARKDPSAAADGEGPTVQIREPGSSTFRPQEDTFWIFGGHPQTPRDQVV*AR*TEHIM 364
D R+DP+A D Q R+P + RP E + + HP R R EHI
Sbjct: 467 DPPYRRDPAAYRDINAGAAQRRQPDGAGARPYESSDHV---HPPYARIVSALERSNEHIA 523
Query: 365 RCSGIR 382
R +R
Sbjct: 524 RHEEVR 529
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 248 REPGSSTFRPQEDTFWIFGGHPQ 316
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILAAHPE 301
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 248 REPGSSTFRPQEDTFWIFGGHPQ 316
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILSAHPE 301
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 248 REPGSSTFRPQEDTFWIFGGHPQ 316
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILSAHPE 301
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 24 LLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPPEK 203
LL V + F ++ R R + ++N +FE VTG + + S + P
Sbjct: 82 LLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSS 141
Query: 204 TLAPQP 221
+ P+P
Sbjct: 142 KMQPRP 147
>07_01_0036 + 298626-299573,299973-300239
Length = 404
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 513 RLSVRGSLFFLYPSSTWRRRTYGSLVRESNLAAKGLELALRG*ILIPEQRIICSVH 346
RL V P+S +R T L + AA+GL L + G + +P+ R +C H
Sbjct: 116 RLDVNIGAALHTPASLFRCETLVELRLVVHAAARGLRLDVDGAVHLPQLRRLCLEH 171
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 389 PRSASSRPFAARFDSLTRLPYVR 457
PRSAS +P AA D L RLP +R
Sbjct: 375 PRSASPQPQAAADDWLARLPILR 397
>01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417
Length = 476
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +3
Query: 21 CLLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPPE 200
CL V+ + + TIS+ + RI TG+ ++ T + I
Sbjct: 255 CLSRVVLWQDLLLPHSRYNSKVTISRATKMRISGYLDTGINTLVINETTVKVNTNIS--F 312
Query: 201 KTLAPQPTVKGLLSRFGSQAQALFA 275
KTL P V GL FG + +AL +
Sbjct: 313 KTLIPSVKVLGLSVHFGVRKEALMS 337
>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
Length = 129
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 71 VAKIKNNF*TIEFENCF*IRHRSG 142
+A+I+NNF + ENC I H+SG
Sbjct: 75 LAEIRNNFDILSRENCRGIGHQSG 98
>09_06_0127 + 21019266-21019670
Length = 134
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 312 GWPPKIQNVSSWGRKVLEPGSRIWTVGPSPSAAALGSFRAA*SA 181
GW + + + + VL GS T G +PSAAA GS A S+
Sbjct: 26 GWSFTPRELDAAEQLVLLSGSSTSTTGTTPSAAASGSSSTASSS 69
>09_06_0041 - 20440266-20441381
Length = 371
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 165 TCRSFQQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKTR 290
+CR+++ + P + L + L+S + S A+ALF P+ R
Sbjct: 62 SCRAYRALLPASRRLLASQSPLLLVSLYPSFAEALFHPRLRR 103
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 27.5 bits (58), Expect = 6.8
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +3
Query: 138 VGSMEARFVTCRSFQQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKK---TRFGSSVA 308
VG+ A + C S I PPE PT KG + FG + KK F + ++
Sbjct: 924 VGASTANML-CGSIGYI-PPEYGYGSNPTTKGDVYSFGVLVLEMVTRKKPIDDMFDAGLS 981
Query: 309 IHKLRETKWFKHDEQNILCAVLESGFILEVRAQ 407
+H KW K+ AV++ VR Q
Sbjct: 982 LH-----KWVKNHYHGRADAVVDPALARMVRDQ 1009
>06_02_0060 -
11026885-11026929,11027732-11027756,11027886-11027992,
11028023-11028103,11028301-11028405,11031495-11031762,
11031854-11032056
Length = 277
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 229 FTVGCGARVFSGGLICWKLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVL 50
FT+GCG + S + Q ++ S+E P T + ++ + + L F + +
Sbjct: 129 FTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYVSMFLHSYFLSVIF 188
Query: 49 SLLQ 38
S+LQ
Sbjct: 189 SVLQ 192
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 303 PKIQNVSSWGRKVLEPGSRIWTVGP 229
P+ + + + GR++ PGSRIW P
Sbjct: 144 PRRRRLLTAGRQIWPPGSRIWPPAP 168
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 258 AQALFAPKKTRFGSSVAIHKLRETKWFKHDEQNILCAVLES-GFILE 395
A+A +K+R + H+L ETK +DE N L +E G ILE
Sbjct: 2691 AEASSLAEKSRTSFELHAHELAETKAAANDEANKLAVWVEKHGRILE 2737
>03_05_0995 -
29545058-29545204,29545988-29546074,29546166-29546361,
29546686-29546915
Length = 219
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +3
Query: 117 VFEFVTGVGSMEARFVTCRSFQQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKTRFG 296
+ +FV G+ +C++F + K + +KG+ S A +AP F
Sbjct: 80 LMDFVKGLEDAVVESASCKAFAALPDLRKAITELTVLKGVGPATASAVLAAYAPDVAPFM 139
Query: 297 SSVAI 311
S A+
Sbjct: 140 SDEAM 144
>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
Length = 648
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 92 NCS*SSRLVRGKCTLTSTNHVQQAALSQYL 3
NC+ S + KC LT T H+Q AA +Q +
Sbjct: 442 NCT--STVFISKCKLTKTIHIQNAAYTQLI 469
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 288 VSSWGRKVLEPGSRIWTVGPSPSAAALGSFRAA*SAGNSGKLRTSLPLNPL 136
VS + + +++PG+ + P P+ AA + AA +A +L PL
Sbjct: 8 VSEFQQYIMDPGAFAMSAPPQPAQAAAAAAAAAAAAAGGQELGAPFRYQPL 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,016
Number of Sequences: 37544
Number of extensions: 363475
Number of successful extensions: 1241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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