Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0940
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)                 32   0.33 
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     30   1.3  
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)                 29   1.7  
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 28   5.3  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      28   5.3  
SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)                   27   7.0  
SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         27   7.0  
SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 352 RTYYALFWNQDSSSKCELKTLCRQIRLSHQTTIC 453
           R  Y    +   SSKC  K  CRQ R  H TTIC
Sbjct: 414 RLCYNCLSSSHISSKCTSKFRCRQCRGKHHTTIC 447


>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
          Length = 635

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = +2

Query: 149 GSEVRNLPEFPADQAARKDPSAAADGEGPTVQIREPGSSTFRPQEDTFW 295
           GS  RN      D    K      DG+GPTV I   G + F    D FW
Sbjct: 471 GSRWRNCYTASRDGWEAKTFHQKCDGKGPTVTIVRVGKNVFGGYSDNFW 519


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 352 RTYYALFWNQDSSSKCELKTLCRQIRLSHQTTIC 453
           R  Y    +   SSKC  K  CRQ    H TTIC
Sbjct: 101 RLCYNCLSSSHISSKCTSKFRCRQCGGKHHTTIC 134


>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
          Length = 853

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 170 PEFPADQAARKDPSAAADGEGPTVQIREPGSSTFRPQEDTFWIFGG---HPQTPRDQ 331
           P  P+D  A  DP+ ++D  GP  +  +     +   E+  +       HP T +D+
Sbjct: 547 PTGPSDPTAPSDPTVSSDPTGPKTKFYDDDDCDYEEVEEVLYCKNNVCVHPSTGKDK 603



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 170 PEFPADQAARKDPSAAADGEGPT 238
           P  P+D  A  DP+A +D  GPT
Sbjct: 67  PTVPSDPTAPSDPTAPSDPTGPT 89


>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 368 CSGIRIHPRSASSRPFAARFDSLTRLPYVRRRH 466
           CS  R+ PR A+S PF   +D     P  R  H
Sbjct: 189 CSQDRMDPRQATSFPFIVHYDGCPTTPSDRGGH 221


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 277  PRRHVLDLRWPSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKT 411
            P + +LDL W     A    L  ++     + WN D+ +K   KT
Sbjct: 1209 PSKTILDLEWLGAQDACHDLLVALHAPSSMILWNADTGTKLWKKT 1253


>SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 468 WKKGKEKTKNPEQIDV 515
           W KGK++TKNP+++ +
Sbjct: 526 WNKGKKRTKNPQRLSL 541


>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
          Length = 349

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 212 AAADGEGPTVQIREPGSSTFRPQEDTFW 295
           ++ D +GPTV I   G + F    D FW
Sbjct: 125 SSCDNKGPTVTIVRVGENVFGGYTDRFW 152


>SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -1

Query: 208 RVFSGGLICWKLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSLLQITY 29
           ++ +G +  W           +   ++  KTIL FDS E+ L L       V+  LQ   
Sbjct: 238 KLMAGQIDLWATGDPAGRYLAKQDGISGLKTILRFDSAELYLALNKEVPDEVVQKLQAEL 297

Query: 28  NK 23
           +K
Sbjct: 298 DK 299


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 334 GLSTMNRTYYALFWNQDSSSKCELKTLCRQIRLSHQTTIC 453
           G+    R  Y    +   SSKC  K  CRQ      TTIC
Sbjct: 207 GIVVKLRLCYNCLSSSHISSKCTSKFRCRQCGGKRHTTIC 246


>SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 155 EVRNLPEFPADQAARKDPSAAADGEGPTVQIREPGSSTFRPQEDT 289
           +V + P+      A  DP    + E P V   EPG +   P+ +T
Sbjct: 56  QVEDAPDVDLSNDAYLDPRQEEEEEDPEVNGGEPGENEAEPEGET 100


>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 241 PDSGARL--KHFSP-PRRHVLDLRWPSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKT 411
           PD+G ++  +H    P+     L   +TN AR S +  +  +      + +   + EL  
Sbjct: 626 PDAGPKVIVEHLEQVPKSQKARLYPVTTNKARKSAIKRIFDSDEEDEEDINDDIEAELAN 685

Query: 412 LCRQIRLSHQTTICTPSPCGRRVKKK 489
           L R I    QT   +PS CG + +++
Sbjct: 686 LDRDIEEMKQTLTESPSACGNQAEER 711


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,376
Number of Sequences: 59808
Number of extensions: 395443
Number of successful extensions: 1264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)