Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0940
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.6  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   7.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 395 SASSRPFAARFDSLTR 442
           S  SRPF  R+D  T+
Sbjct: 458 STMSRPFEVRYDPYTQ 473


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 320 EFVDGHRRSKTCLLGGEKCLSL 255
           E VDG +    C L G K + +
Sbjct: 74  ETVDGRKVKSVCTLDGNKLIQV 95


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 374 GIRIHPRSASSRPFAARFDSLTRLPYVRRRHVEEG*RKNKEPRTDR 511
           G  I    A++ PF        R+P V RR + E  R +K    D+
Sbjct: 761 GPYIQKMIAAAAPFKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQ 806


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,067
Number of Sequences: 438
Number of extensions: 3478
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)