Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0940
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42430.1 68414.m04893 expressed protein                             33   0.087
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    29   1.4  
At1g63420.1 68414.m07172 expressed protein                             29   1.4  
At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related c...    29   1.9  
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha...    29   2.5  
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha...    29   2.5  
At1g06630.1 68414.m00700 F-box family protein contains F-box dom...    28   3.3  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   4.3  
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    27   5.7  

>At1g42430.1 68414.m04893 expressed protein
          Length = 435

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 252 SQAQALFAPKKTRFGSSVAIHKLRETKWFKHDE 350
           S A +L   K  RFG   + H+LR TKWFK D+
Sbjct: 7   SSAISLLDIKLRRFGVGASNHELRLTKWFKGDQ 39


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 55  HLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRGS 162
           +L    RE  E  L  R R+L+ N SS EW+ W+ G+
Sbjct: 154 YLDHVLREGKEIGLKKRERKLYTNNSSHEWISWRLGT 190


>At1g63420.1 68414.m07172 expressed protein
          Length = 578

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 370 FWNQDSSSKCELKTLCRQIRLSHQTTICTPSPCGRRVKKKQ 492
           F NQ+ S  C    L  + + SH+ TI T  P   RV +K+
Sbjct: 88  FLNQNRSGSCSRTPLLNKKKPSHRPTITTIKPVPVRVSEKK 128


>At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related
           contains weak similarity to Rho-GTPase-activating
           protein 1 (GTPase-activating protein rhoOGAP)
           (Rho-related small GTPase protein activator) (CDC42
           GTPase-activating protein) (p50-rhoGAP)
           (Swiss-Prot:Q07960) [Homo sapiens]
          Length = 202

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 250 PNLDSRPFTVGCGARVFSGGLICWKLRQVTNL 155
           P L SR F   CG  +FSGGL   KLR ++ +
Sbjct: 111 PGLQSRLFLATCGRFLFSGGLY-GKLRYISRV 141


>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1218

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 248 REPGSSTFRPQEDTFWIFGGHPQ 316
           +  G  TFR + D FWI   HP+
Sbjct: 279 KRTGIQTFRREHDRFWILAVHPE 301


>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1216

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 248 REPGSSTFRPQEDTFWIFGGHPQ 316
           +  G  TFR + D FWI   HP+
Sbjct: 279 KRTGLQTFRREHDRFWILAVHPE 301


>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/65 (26%), Positives = 37/65 (56%)
 Frame = +3

Query: 24  LLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPPEK 203
           +L ++   ++   +  S++ RT+ KL ++    + V+G+G  EA +V   SF+ +   ++
Sbjct: 25  ILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVSGMGEQEASYVFPESFKDL--VDR 82

Query: 204 TLAPQ 218
           T+A Q
Sbjct: 83  TVALQ 87


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 275  PQEDTFWIFGGHPQTPRDQVV*AR*TEHIMRCSGI 379
            P++   W +GGHP  P    +  +  E +  CS +
Sbjct: 2766 PEKSMLWAYGGHPSLPVSAELFHKQQEFLQLCSTV 2800


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 46  VRVHLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRG 159
           +  +L    RE     L  R R+L+ N SSQEW  W+ G
Sbjct: 157 IETYLDHVLREGKAIGLMNRERKLYTNNSSQEWYPWRSG 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,816
Number of Sequences: 28952
Number of extensions: 275648
Number of successful extensions: 858
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)