Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0939
(515 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 254 1e-66
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 239 2e-62
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 168 6e-41
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 151 9e-36
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 126 2e-28
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 116 2e-25
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 114 1e-24
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 109 4e-23
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 107 1e-22
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 107 1e-22
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 105 5e-22
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 102 6e-21
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 101 7e-21
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 95 6e-19
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 92 6e-18
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 89 7e-17
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 86 4e-16
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 85 9e-16
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 84 2e-15
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 80 3e-14
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 76 6e-13
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 73 5e-12
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 69 6e-11
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 57 2e-07
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 54 1e-06
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 49 7e-05
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 47 2e-04
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 46 5e-04
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 42 0.008
UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellul... 41 0.015
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 40 0.034
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 40 0.034
UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1; Pseudendocl... 28 0.27
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.55
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 36 0.72
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.72
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 35 0.96
UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42; Bacter... 35 0.96
UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmi... 35 1.3
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 35 1.3
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 35 1.3
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 34 1.7
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 34 1.7
UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellul... 34 1.7
UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta hyd... 34 2.2
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 34 2.2
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 33 2.9
UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lya... 33 2.9
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 33 3.9
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 33 5.1
UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus laev... 32 6.8
UniRef50_Q026Q4 Cluster: Trigger factor; n=1; Solibacter usitatu... 32 6.8
UniRef50_A6LXE0 Cluster: Putative uncharacterized protein precur... 32 6.8
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 32 6.8
UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus we... 32 8.9
UniRef50_Q7RQE1 Cluster: Protein factor associated with neutral-... 32 8.9
UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=... 32 8.9
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 254 bits (621), Expect = 1e-66
Identities = 117/135 (86%), Positives = 129/135 (95%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
EEEV+K++TI+SNP QYK+P+ FLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 239 bits (586), Expect = 2e-62
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 168 bits (409), Expect = 6e-41
Identities = 80/134 (59%), Positives = 107/134 (79%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVI +K QHIL+++NTNID +++ FA+TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E++VE++ITIM NPRQY+IP QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAH
Sbjct: 61 EDKVERVITIMQNPRQYEIP------QKGVRDGRCSQVPANGLDNKLREELERLKKIRAH 114
Query: 374 RGMRHYWGLRVRGQ 415
RG+RH+WGL V Q
Sbjct: 115 RGLRHFWGLHVHCQ 128
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 151 bits (366), Expect = 9e-36
Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 2/137 (1%)
Frame = +2
Query: 14 MSLVIPDK--FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 187
MS VI + F++I RI+NTNIDGKR A+T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 188 CTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 367
TE++ KI ++++P + IP LNR D DGK Q+ S+ LD+K+REDLERLKKI+
Sbjct: 61 LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120
Query: 368 AHRGMRHYWGLRVRGQH 418
+HRG+RH+WGL+VRGQH
Sbjct: 121 SHRGLRHFWGLKVRGQH 137
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 126 bits (305), Expect = 2e-28
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +2
Query: 17 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 196
++V P+ ++ +LR+ NTNI GK + A+ IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 197 EEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 376
E + ++ ++ +P + IP LNR D GK + + + S R DLERL+K R R
Sbjct: 63 AEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCER 122
Query: 377 GMRHYWGLRVRGQH 418
G+RH+ L+VRGQH
Sbjct: 123 GVRHHHNLKVRGQH 136
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 116 bits (280), Expect = 2e-25
Identities = 52/129 (40%), Positives = 91/129 (70%)
Frame = +2
Query: 29 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 208
P F+ ++R+++TN+DG+R + A+T I G+GRR++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 209 KIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 388
I++I+ NP +++IP LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH
Sbjct: 68 LIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRH 127
Query: 389 YWGLRVRGQ 415
GL+VRGQ
Sbjct: 128 GLGLKVRGQ 136
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 114 bits (275), Expect = 1e-24
Identities = 57/129 (44%), Positives = 85/129 (65%)
Frame = +2
Query: 29 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 208
P + Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 209 KIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 388
+I + +P IP+ ++N Q+DI+DG S L + LD+ LR +ER KK + R R
Sbjct: 67 RISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRL 126
Query: 389 YWGLRVRGQ 415
GL+VRGQ
Sbjct: 127 DVGLKVRGQ 135
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 109 bits (262), Expect = 4e-23
Identities = 57/134 (42%), Positives = 92/134 (68%), Gaps = 4/134 (2%)
Frame = +2
Query: 14 MSLVIP--DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 187
MSLV+ D+F+ I+RI+NTN+DGK+++ + + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 188 CTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 367
T+EE KI ++ QY +D+ +GK ++T++ L++KLREDLER+KKI+
Sbjct: 61 LTDEEAHKITEVIKMVPQY---------IRDLKNGKNYEVTTNELETKLREDLERIKKIK 111
Query: 368 AHRG--MRHYWGLR 403
+ +RH+WGLR
Sbjct: 112 YSQWLCLRHHWGLR 125
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 107 bits (258), Expect = 1e-22
Identities = 52/128 (40%), Positives = 80/128 (62%)
Frame = +2
Query: 32 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 211
++ +H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G EEEV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 212 IITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 391
+ T + +P LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH
Sbjct: 78 LDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHE 136
Query: 392 WGLRVRGQ 415
GL+VRGQ
Sbjct: 137 RGLKVRGQ 144
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 107 bits (257), Expect = 1e-22
Identities = 50/127 (39%), Positives = 84/127 (66%)
Frame = +2
Query: 35 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 214
+F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TEEEV+KI
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
Query: 215 ITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 394
++++P ++ IP NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH
Sbjct: 65 EEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHEL 124
Query: 395 GLRVRGQ 415
GL RGQ
Sbjct: 125 GLPCRGQ 131
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 105 bits (253), Expect = 5e-22
Identities = 46/126 (36%), Positives = 88/126 (69%)
Frame = +2
Query: 38 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 217
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 218 TIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 397
+ ++Y +P+ LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G
Sbjct: 88 EYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
Query: 398 LRVRGQ 415
+VRGQ
Sbjct: 147 KKVRGQ 152
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 102 bits (244), Expect = 6e-21
Identities = 49/128 (38%), Positives = 82/128 (64%)
Frame = +2
Query: 32 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 211
D+ ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G E+V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 212 IITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 391
+ ++ N + +P LNR++DI G+ L +L ++ED+ +KKIR+++G+RH
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHE 185
Query: 392 WGLRVRGQ 415
G +VRGQ
Sbjct: 186 RGQKVRGQ 193
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 101 bits (243), Expect = 7e-21
Identities = 46/127 (36%), Positives = 83/127 (65%)
Frame = +2
Query: 35 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 214
+F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Query: 215 ITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 394
+++ + ++P+ NR+KD G L +S+L +R D+ER KKI++ RG+RH
Sbjct: 66 ENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSL 125
Query: 395 GLRVRGQ 415
GL+VRGQ
Sbjct: 126 GLKVRGQ 132
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 95.5 bits (227), Expect = 6e-19
Identities = 43/127 (33%), Positives = 79/127 (62%)
Frame = +2
Query: 35 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 214
+F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG +E+V KI
Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKI 64
Query: 215 ITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 394
+++ +P + IP NR+KD+ G L ++L ++ED+ +KKIR ++G+RH
Sbjct: 65 ESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHEL 124
Query: 395 GLRVRGQ 415
L RGQ
Sbjct: 125 RLPCRGQ 131
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 92.3 bits (219), Expect = 6e-18
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +2
Query: 110 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIP 253
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 88.6 bits (210), Expect = 7e-17
Identities = 40/127 (31%), Positives = 77/127 (60%)
Frame = +2
Query: 35 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 214
+++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+E+V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
Query: 215 ITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 394
++ +P P FLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +
Sbjct: 110 EKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMF 169
Query: 395 GLRVRGQ 415
GL+VRGQ
Sbjct: 170 GLKVRGQ 176
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 86.2 bits (204), Expect = 4e-16
Identities = 41/128 (32%), Positives = 76/128 (59%)
Frame = +2
Query: 32 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 211
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ ++ +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 212 IITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 391
++ + N +P+ N QKD G+ + T ++L R+D+ R+K I ++RG+RH
Sbjct: 78 VVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHK 136
Query: 392 WGLRVRGQ 415
G +VRGQ
Sbjct: 137 RGQKVRGQ 144
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 85.0 bits (201), Expect = 9e-16
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +2
Query: 269 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 418
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 84.2 bits (199), Expect = 2e-15
Identities = 42/129 (32%), Positives = 72/129 (55%)
Frame = +2
Query: 32 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 211
+K +RI + NI+G F + IKGVG R SN++ K D++ + + ++E+
Sbjct: 13 EKSMTFIRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEE 72
Query: 212 IITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 391
++ I + P +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH
Sbjct: 73 VVNIFGKSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHL 132
Query: 392 WGLRVRGQH 418
L+ RGQH
Sbjct: 133 SRLKTRGQH 141
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 79.8 bits (188), Expect = 3e-14
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +2
Query: 35 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSN----IVLKKADIDLDKRAGECTEEE 202
K I+RI N +I+G + A+ +KG+G+ S+ ++ K +ID G E +
Sbjct: 15 KAMSIVRIANKDINGGLNIQRALDQVKGIGQTMSHSLSYVIEHKFNIDPSTPIGSLNESQ 74
Query: 203 VEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGM 382
V ++ ++ +P +Y +P LNR+ D+ GK L ++L +R+ + R +R RG
Sbjct: 75 VTQVEELIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGY 134
Query: 383 RHYWGLRVRGQH 418
RH +G +VRGQH
Sbjct: 135 RHQYGQKVRGQH 146
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 75.8 bits (178), Expect = 6e-13
Identities = 40/123 (32%), Positives = 71/123 (57%)
Frame = +2
Query: 47 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 226
I+R+ +T+++G ++V +A+ I+G+G + + K ID G EE++ K+ +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAV 67
Query: 227 SNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 406
N + P FLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+V
Sbjct: 68 RNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKV 126
Query: 407 RGQ 415
RGQ
Sbjct: 127 RGQ 129
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 72.5 bits (170), Expect = 5e-12
Identities = 38/123 (30%), Positives = 66/123 (53%)
Frame = +2
Query: 47 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 226
I+ I + ++DG + + + + GV +++ V ID ++ G ++EE+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 227 SNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 406
NP +Y IP NR++D GK L ++ + D++R +I + RG RH GL V
Sbjct: 73 RNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPV 132
Query: 407 RGQ 415
RGQ
Sbjct: 133 RGQ 135
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 68.9 bits (161), Expect = 6e-11
Identities = 39/133 (29%), Positives = 67/133 (50%)
Frame = -2
Query: 412 TTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*ESVWYLILPR 233
TT T APV+S SV +NLL+ L++ + +++ G L I I+L + E + L R
Sbjct: 46 TTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSELSR 105
Query: 232 IRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAFAIDVRIHDT 53
+ HD F L L +I++ F + VG A+ D H+L ++V + D
Sbjct: 106 VGHDHHQRFQLRGGELPGALPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVEDA 165
Query: 52 KNMLKFVWNDQRH 14
++L+ + +D+ H
Sbjct: 166 DDVLEIITDDEAH 178
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 57.2 bits (132), Expect = 2e-07
Identities = 41/121 (33%), Positives = 63/121 (52%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
RI+ + +KV A+T I G+GR S +LK ID +KR G+ T+EE+ KI + +
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYIQD 62
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
+K V+G+ L S++ ++ RL +I +RG+RH GL VRG
Sbjct: 63 --HFK------------VEGE--------LRSEVERNIRRLIEIGCYRGIRHKLGLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 54.4 bits (125), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2
Query: 224 MSNPRQYKIPD*FLNRQKDIVDGKYSQL 307
M NPRQYKIPD FLNRQKD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.8 bits (111), Expect = 7e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +1
Query: 4 LNQNVAGHSRQISTYSSYHEYEHRWQTQGYVCDDGYQRCWP 126
L+ +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 47.2 bits (107), Expect = 2e-04
Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS- 229
R++N I ++++ A+ +I G+G+ + +++K + EE+ K I++
Sbjct: 3 RVLNVEIPNHKRIVIALCSIFGIGKSLATEIVEKT--------AKLQEEKFGKKFPILTE 54
Query: 230 NPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 409
N + +I + L +D+ + T +L +++ +++RL +I+ +RG+RH GL VR
Sbjct: 55 NTKVKEINEEVLQVIRDVAK---TYKTEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVR 111
Query: 410 GQ 415
GQ
Sbjct: 112 GQ 113
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 46.0 bits (104), Expect = 5e-04
Identities = 35/121 (28%), Positives = 59/121 (48%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
RI+ +I G ++V F++ + GVG + +++K ID D +A + T +++ I I+
Sbjct: 3 RIIGVDIPGNKRVEFSLRYLYGVGPAKALEIIQKVGIDPDLKAKDLTPDQIGAITKIL-- 60
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
Q D+ L +L L D+ RL++I +RG+RH L VRG
Sbjct: 61 -------------QDDL-------LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 41.9 bits (94), Expect = 0.008
Identities = 32/121 (26%), Positives = 56/121 (46%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
RI ++ +++ A+T I G+G + + +K I KR GE T +E
Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDE---------- 52
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
LN + +D Y +L +++ ++++LK + +RG+RH GL VRG
Sbjct: 53 ----------LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellular
organisms|Rep: 30S ribosomal protein S13 - Bartonella
henselae (Rochalimaea henselae)
Length = 122
Score = 41.1 bits (92), Expect = 0.015
Identities = 31/121 (25%), Positives = 57/121 (47%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
RI NI ++V+ A+ I G+G +++ + KK I + +R E ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVIIALQYIHGIGPKFAQEITKKVGIPIGRRVHELSDAEVLQI------ 56
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
++ +D Y +L ++ +++RL + +RG+RH L VRG
Sbjct: 57 --------------REAIDQGYQ--VEGDLRREVAMNVKRLMDLGCYRGLRHRRSLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 39.9 bits (89), Expect = 0.034
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Frame = -2
Query: 391 VMSHPSVSANLLEPLQIFTEF*IQVGGG---QLAVFTINNILLPI*ESVWYLILPRIRHD 221
V++ +++A+ E LQ+ T + G G + VF I++ I W + + D
Sbjct: 38 VVADTALAASFTETLQVRT---VGRGYGIDQNVHVFARFKIIVTIKHPGWNAVGEGVLKD 94
Query: 220 SDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAFAIDVRIHDTKNML 41
L C S V +NVGF E N+G N +S A+DV + T+ +
Sbjct: 95 LHESILLGRCELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDLALDVCVKHTQEVP 154
Query: 40 KFV-WNDQRH 14
V ND+ H
Sbjct: 155 VVVGLNDRCH 164
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 39.9 bits (89), Expect = 0.034
Identities = 31/121 (25%), Positives = 57/121 (47%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
RI NI ++V A+T I G+G + ++ K I ++R + ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQI------ 56
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
++ +D Y+ +L ++ +++RL + +RG+RH GL VRG
Sbjct: 57 --------------REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1;
Pseudendoclonium akinetum|Rep: Ribosomal protein S13 -
Pseudendoclonium akinetum (Green alga)
Length = 119
Score = 28.3 bits (60), Expect(2) = 0.27
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 272 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
Q +++ +L +SN + E ++ L KI +RG RH L RGQ
Sbjct: 51 QLELLTKSCRRLIASNKKREKVEAIKSLIKISCYRGTRHMNALPCRGQ 98
Score = 27.9 bits (59), Expect(2) = 0.27
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 56 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 208
++ +N+ + FA+ AI GVG++ + V I+ R E ++E
Sbjct: 3 LLGSNVSENKAAFFALQAIYGVGQKSAAAVCNLVGINPQTRLRELNSTQLE 53
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 35.9 bits (79), Expect = 0.55
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = +2
Query: 314 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 418
+ L +L++++ER++ + ++RG RH GL VRGQ+
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQN 39
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 35.5 bits (78), Expect = 0.72
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +2
Query: 71 IDGKRKVMFAMTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEEEVEK 211
+D K KV A G+GR +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 35.5 bits (78), Expect = 0.72
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 308 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
T S++ R++++RL I ++RG RH GL VRGQ
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQ 101
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 35.1 bits (77), Expect = 0.96
Identities = 28/123 (22%), Positives = 56/123 (45%)
Frame = +2
Query: 47 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 226
++ + NI+ +K+ FA+ AI G+G + + + ++ + + E ++ K+
Sbjct: 1 MIHLFGININSNKKIPFALKAIYGLGNKKVDELCSYMGLNPKLKMSDLNESQISKLC--- 57
Query: 227 SNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 406
+ I + FL S L +++RL I+++RG+RH +GL V
Sbjct: 58 -----HYIEENFL--------------IESELRKNQTYNIKRLLDIKSYRGLRHAYGLPV 98
Query: 407 RGQ 415
GQ
Sbjct: 99 HGQ 101
>UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42;
Bacteria|Rep: 30S ribosomal protein S13 -
Corynebacterium efficiens
Length = 122
Score = 35.1 bits (77), Expect = 0.96
Identities = 25/121 (20%), Positives = 57/121 (47%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
R+ ++ +++ A+T I G+G + +L++ + D R T+E++ +
Sbjct: 3 RLAGVDLPRNKRMEIALTYIYGIGPARAKQLLEETGVSPDLRTDNLTDEQIASL------ 56
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
+D+++ + +L +++ D+ R +I +++G+RH GL VRG
Sbjct: 57 --------------RDVIEATWK--VEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S13 - Nephroselmis
olivacea
Length = 125
Score = 34.7 bits (76), Expect = 1.3
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = +2
Query: 56 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 235
I NT + K+KV A+ I G+G + + + + + + + +VE++ ++S
Sbjct: 4 IANTYLSQKQKVSIALQQIYGIGSHLAYQICDQLGLSPNFKIEQLNRNQVEQLSLLVSQ- 62
Query: 236 RQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
S +T S L +++D+ RL I +RG R+ L VRGQ
Sbjct: 63 ---------------------SYVTGSKLKRTIQQDMSRLISISCYRGFRYIQKLPVRGQ 101
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 34.7 bits (76), Expect = 1.3
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 314 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 136
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 34.7 bits (76), Expect = 1.3
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 314 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 99
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 329 KLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
K RE+++RL +I ++RG RH GL RGQ
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQ 100
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 314 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
++L ++ +D++RLK+ +RG RH GL VRGQ
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQ 98
>UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellular
organisms|Rep: 30S ribosomal protein S13 -
Propionibacterium acnes
Length = 123
Score = 34.3 bits (75), Expect = 1.7
Identities = 29/121 (23%), Positives = 54/121 (44%)
Frame = +2
Query: 53 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 232
R++ ++ +++ A+T I G+GR + LK I D R E T++++ +
Sbjct: 3 RLIGVDLPRDKRLEVALTYIYGIGRTRATETLKATGISGDLRVHELTDDQLVAL------ 56
Query: 233 PRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 412
+D ++ Y +L ++ D+ R +I ++G RH GL VRG
Sbjct: 57 --------------RDHIEANYH--VEGDLRREVAADIRRKIEIGTYQGRRHRSGLPVRG 100
Query: 413 Q 415
Q
Sbjct: 101 Q 101
>UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta
hydrolase superfamily; n=2; Cryptosporidium|Rep:
COG1752: esterase of the alpha-beta hydrolase
superfamily - Cryptosporidium hominis
Length = 794
Score = 33.9 bits (74), Expect = 2.2
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Frame = +2
Query: 32 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 211
+ F +L+ +N +I K + + + SN K DK+ + E
Sbjct: 645 NSFVVVLKSLNDDIQRLNKTLITIDSFLKSSNNISNKATKLLKYIEDKQKKGIFSAKFED 704
Query: 212 IITIMSNPRQYK-----IPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKI 364
+IT++S Y I +N ++ IVD K+SQL + + LRE E K+
Sbjct: 705 VITLLSLYEDYVEKLQGIRIKEINSRRIIVDSKHSQLILARIIIALREQNEHFPKL 760
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 33.9 bits (74), Expect = 2.2
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 341 DLERLKKIRAHRGMRHYWGLRVRGQH 418
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 33.5 bits (73), Expect = 2.9
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 190 AFASTLVKINVGFFENNVG-VPPANTFDSRHRK-HNLAFAIDVRIHDTKNML 41
AFA T V+ VGF++ VG + +D +K H+ AF DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lyase;
n=1; Flavobacterium johnsoniae UW101|Rep: DNA-(Apurinic
or apyrimidinic site) lyase - Flavobacterium johnsoniae
UW101
Length = 216
Score = 33.5 bits (73), Expect = 2.9
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 29 PDKFQHILRIMNT--NIDGKRKVMFAMTAIKGVGRRYSNIVLKKAD 160
P K Q +L I +T N + M +TA+KG+GR+ +N++L++ +
Sbjct: 87 PTKAQWLLEIAHTIQNDNDIPLTMSGLTALKGIGRKSANVILRETE 132
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 33.1 bits (72), Expect = 3.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 314 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
S+L K+ D+ER +K ++ G RH G+ V+GQ
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQ 103
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 32.7 bits (71), Expect = 5.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 320 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 415
L +++ + ERL KI ++RG RH+ GL RGQ
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQ 103
>UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus
laevis|Rep: LOC100037042 protein - Xenopus laevis
(African clawed frog)
Length = 384
Score = 32.3 bits (70), Expect = 6.8
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 215 ITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 358
+ I ++ KIPD LN + V +S+ + N +S+L+ D +R+K
Sbjct: 6 VGIHKEEQEQKIPDPLLNGDAEDVPQHFSETPTCNTESRLQADQQRIK 53
>UniRef50_Q026Q4 Cluster: Trigger factor; n=1; Solibacter usitatus
Ellin6076|Rep: Trigger factor - Solibacter usitatus
(strain Ellin6076)
Length = 422
Score = 32.3 bits (70), Expect = 6.8
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 173 KRAGECTEEEVEKIITIMSNPRQYKIPD*FLNRQ-KDIVDGKYSQLTSSNLD-SKLREDL 346
+R E +E KI+ + + ++ +P+ F+ RQ ++ V+ + +D SKL+ D
Sbjct: 272 QRQYEAQQEAKNKIVDKLVDAHEFPVPEVFVERQIRNRVEQSLRAMAEQGVDPSKLKLDW 331
Query: 347 ERLKKIRAHRGMR 385
E++K+ + + R
Sbjct: 332 EKVKEAQREKATR 344
>UniRef50_A6LXE0 Cluster: Putative uncharacterized protein
precursor; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
Putative uncharacterized protein precursor - Clostridium
beijerinckii NCIMB 8052
Length = 445
Score = 32.3 bits (70), Expect = 6.8
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +2
Query: 119 VGRRYSNIVLKKADIDLDKRAGECTEEEVE----KIITIMSNPRQYKIPD*FLNRQKDIV 286
V +RY+ I+LKK DID K E +++ K+ ++ P Q + LN+ +D +
Sbjct: 148 VTKRYNAIILKKIDIDKLKTGLEIKNNDLDALKIKVSVGLAIPNQLEDKQIELNKAQDEI 207
Query: 287 DGKYSQLTSSNLD 325
K + L +NLD
Sbjct: 208 KAKENSL-KNNLD 219
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 32.3 bits (70), Expect = 6.8
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 344 LERLKKIRAHRGMRHYWGLRVRGQ 415
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus
weihenstephanensis KBAB4|Rep: Ribosomal protein S13 -
Bacillus weihenstephanensis KBAB4
Length = 75
Score = 31.9 bits (69), Expect = 8.9
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 203 VEKIITIMSNPRQYKIPD*F---LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
++K++ + PR+++ D L R +DI+D +L ++ +++RL +I ++
Sbjct: 6 LKKLLQKLVFPRKHESRDLSEDELGRIRDIID---RIKVEGDLRREVSLNIKRLMEIGSY 62
Query: 374 RGMRHYWGLRVRG 412
RG+RH GL VRG
Sbjct: 63 RGLRHRRGLPVRG 75
>UniRef50_Q7RQE1 Cluster: Protein factor associated with
neutral-sphingomyelinase activation; n=3; Plasmodium
(Vinckeia)|Rep: Protein factor associated with
neutral-sphingomyelinase activation - Plasmodium yoelii
yoelii
Length = 1490
Score = 31.9 bits (69), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 163 NVGFFENNVGVPPANTFDSRHRKHNL 86
N+ F NN PP NTF+ ++K+N+
Sbjct: 1189 NLSQFSNNCATPPINTFEKENQKYNV 1214
>UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=4;
Magnoliophyta|Rep: Mitochondrial ribosomal protein S13 -
Oenothera bertiana (Bertero's evening primrose)
Length = 114
Score = 31.9 bits (69), Expect = 8.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 335 REDLERLKKIRAHRGMRHYWGLRVRGQ 415
R D+ER I +RG+RH GL +RGQ
Sbjct: 73 RADIERFISISCYRGIRHQDGLPLRGQ 99
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,729,630
Number of Sequences: 1657284
Number of extensions: 9076166
Number of successful extensions: 27086
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 25994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26855
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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