Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0939
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 213 1e-56
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 213 1e-56
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.015
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.9
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.1
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 6.7
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 6.7
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 8.9
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 213 bits (521), Expect = 1e-56
Identities = 100/135 (74%), Positives = 116/135 (85%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
EE+E+I+TI+ NP Q+KIP FLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 213 bits (521), Expect = 1e-56
Identities = 100/135 (74%), Positives = 116/135 (85%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
EE+E+I+TI+ NP Q+KIP FLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 33.9 bits (74), Expect = 0.015
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 341 DLERLKKIRAHRGMRHYWGLRVRGQH 418
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 226 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 116
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 77 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 169
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 167 LDKRAGECTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDL 346
L+ A TEE II+ N QY IP+ F+ +K+ + + +S +SK D
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162
Query: 347 ERLKKIR 367
++ R
Sbjct: 163 SNRRESR 169
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 344 NLHGVLNPSWRRSAGCIYHQQYPFAYLGISLVSY 243
++H ++ R +A H F+YLG+SL +Y
Sbjct: 47 HVHKLIQKDERYTAVFFAHDSTVFSYLGLSLKAY 80
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 243 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 124
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 344 NLHGVLNPSWRRSAGCIYHQQYPFAYLGISLVSY 243
N H ++PS R S+ +Y P Y + VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 8.9
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 146 LKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLD 325
L+K D L+ R+ ++ +E+ + ++ IP+ ++ +D + +L ++ D
Sbjct: 974 LRKLDGVLEARSKRLSQ--LEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPD 1031
Query: 326 -SKLREDLERLKKIRAHRGMRHYWGLRVR 409
S ++ + LK R GM H W LR+R
Sbjct: 1032 KSAVQRGITALK--RDAEGMSHIWQLRLR 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,717
Number of Sequences: 5004
Number of extensions: 39240
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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