Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0939
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582          210   7e-55
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...   199   1e-51
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...   197   4e-51
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978           87   1e-17
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372     38   0.006
03_01_0404 + 3138624-3140096                                           31   0.55 
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045...    28   3.9  
03_01_0646 + 4742398-4742994,4743681-4744085                           27   6.8  
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084     27   8.9  
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576...    27   8.9  

>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score =  210 bits (512), Expect = 7e-55
 Identities = 89/129 (68%), Positives = 117/129 (90%)
 Frame = +2

Query: 32  DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 211
           + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI  KKADID++KRAGE T EE+E+
Sbjct: 3   EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62

Query: 212 IITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 391
           ++T+++NPRQ+K+PD FLNR+KD  DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63  LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122

Query: 392 WGLRVRGQH 418
           WGLRVRGQH
Sbjct: 123 WGLRVRGQH 131


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score =  199 bits (485), Expect = 1e-51
 Identities = 93/151 (61%), Positives = 121/151 (80%), Gaps = 16/151 (10%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 178
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60

Query: 179 -----------AGECTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLD 325
                      AGE T EE+E+++T+++NPRQ+K+PD FLNR+KD  DG++SQ+ S+ LD
Sbjct: 61  YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120

Query: 326 SKLREDLERLKKIRAHRGMRHYWGLRVRGQH 418
            KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score =  197 bits (481), Expect = 4e-51
 Identities = 93/153 (60%), Positives = 121/153 (79%), Gaps = 18/153 (11%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 178
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60

Query: 179 -------------AGECTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSN 319
                        AGE T EE+E+++T+++NPRQ+K+PD FLNR+KD  DG++SQ+ S+ 
Sbjct: 61  PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120

Query: 320 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 418
           LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153


>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
          Length = 78

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 37/50 (74%), Positives = 44/50 (88%)
 Frame = +2

Query: 269 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 418
           R+KD  DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 12  RKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61


>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
          Length = 161

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +2

Query: 335 REDLERLKKIRAHRGMRHYWGLRVRGQ 415
           R  +ERLK+IR +RG+RH  GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134


>03_01_0404 + 3138624-3140096
          Length = 490

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 287 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 385
           +G Y QL++  LDS  ++D  R++K+   RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435


>06_03_1275 +
           28903961-28904123,28904225-28904322,28904406-28904550,
           28904690-28904814,28904957-28905049,28905297-28905362,
           28905459-28905524,28905790-28905870,28905947-28906123,
           28906212-28906287,28906394-28906521,28906639-28906950
          Length = 509

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 159 SAFLRTMLEYLRPTPLIAVIANITL 85
           S+FL TM EY+R  P  A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  CDDGYQRCWPEVLQHCSQKSR 159
           CDD Y+R W  +L+   ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316


>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
          Length = 156

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 267 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 169
           F N     YCLG  +I ++++T+       RLS
Sbjct: 40  FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72


>02_05_1211 +
           34956601-34956850,34956950-34957102,34957562-34957674,
           34958092-34958198,34958289-34958404,34958502-34958577,
           34958652-34958693,34958809-34958917,34959102-34959199,
           34959297-34959390,34959517-34959642
          Length = 427

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +2

Query: 155 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDS-- 328
           + +DLD R+G  T   V K  T+  NP + ++ +  +   KD     Y +LT+ N ++  
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247

Query: 329 KLREDLERLKK 361
            ++E L++L++
Sbjct: 248 SVKEALQKLRE 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,351
Number of Sequences: 37544
Number of extensions: 252434
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)