Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0939
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.) 242 1e-64
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.56
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 5.3
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 5.3
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7) 27 6.9
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 6.9
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 242 bits (592), Expect = 1e-64
Identities = 108/135 (80%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE+++TIM NPRQYKIPD FLNRQKD DGKYSQ+ ++ LD+K+REDLERLKKIRAH
Sbjct: 61 EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/34 (82%), Positives = 34/34 (100%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 115
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 182 GECTEEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 361
GEC ++V + +PR K PD LN KD +GK T+ + ++L D ++ K
Sbjct: 645 GECVTQKV----CVHLDPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKN 699
Query: 362 IRAH 373
R+H
Sbjct: 700 ARSH 703
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 385 SHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTIN-NILLPI*ESVWYLILPRIRHDSDNF 209
+HPSVS +L + + T + V GQ + + ++ + + +SVWY P + D +F
Sbjct: 874 THPSVSVSLGQSIWYHTHLSVSVSLGQSIWYNTHLSVSVSLCQSVWYHTHPSVLQDVLDF 933
Query: 208 F 206
+
Sbjct: 934 Y 934
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 385 SHPSVSANLLEPLQIFTEF*IQVGGGQLAVF-TINNILLPI*ESVWYLILPRI 230
SHPS+S +L + + T + V GQL + T ++ + + +S+WY P +
Sbjct: 262 SHPSMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVSLGQSIWYHTHPSV 314
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 385 SHPSVSANLLEPLQIFTEF*IQVGGGQLAVF-TINNILLPI*ESVWYLILPRI 230
+HPSVS +L + + T + V GQ + T ++ + + +S+WY P +
Sbjct: 600 THPSVSVSLCQSIWYHTHPSVSVSLGQSIWYNTHPSVSVSLGQSIWYHTHPSV 652
>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 146 LKKADIDLDKRAGECTEEEVEKII-TIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSS-N 319
LK+ ++L +A TE+E+ + ++M+N R K+ L + D + K LTSS
Sbjct: 726 LKRVKVEL--QASRQTEQELRSTMHSLMANERSAKVELSQLKAENDSLQHKIQSLTSSRQ 783
Query: 320 LDSKLREDLERLKKIRAHRGMR 385
D LER K+++ R R
Sbjct: 784 QDRSAISSLER--KLKSERDAR 803
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3
Query: 204 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 94
T +++HS + ++++ F+ + +E RPT L ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 35 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 214
+F+H ++ + KRK + + +NI K DIDL G CTE+E+ ++
Sbjct: 59 EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109
Query: 215 I 217
+
Sbjct: 110 V 110
>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
Length = 1376
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 206 EKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSN--LDSKLREDLER 352
++I T M + K+ + ++K+ ++GKY QL S L+S +D R
Sbjct: 1207 DQICTHMHEVEELKLKIARIEKEKEYLEGKYDQLNSDKPVLESSRVDDFSR 1257
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 263 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 358
L R+K + + KY + +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 VDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 385
V+ KY + S + + + LRE+LE +KK+R G++
Sbjct: 2765 VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +2
Query: 302 QLTSS--NLDSKLREDLERLKKI 364
QLTS N+D K+RE LE++KK+
Sbjct: 72 QLTSEEDNVDPKIREGLEKIKKL 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,539,079
Number of Sequences: 59808
Number of extensions: 287565
Number of successful extensions: 804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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