Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0939
(515 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18 pro... 239 3e-63
BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18 p... 239 3e-63
BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18 p... 239 3e-63
BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18 p... 239 3e-63
AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18 ... 239 3e-63
AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18 p... 239 3e-63
AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18 ... 239 3e-63
AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18 ... 239 3e-63
AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18 ... 239 3e-63
AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18 p... 239 3e-63
AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18 p... 122 7e-28
BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein. 95 1e-19
BX248408-4|CAM26259.1| 34|Homo sapiens ribosomal protein S18 p... 64 4e-10
AY536376-1|AAT66049.1| 34|Homo sapiens rhabdomyosarcoma antige... 64 4e-10
AF041462-1|AAB99794.1| 348|Homo sapiens I-FLICE isoform 5 protein. 33 0.78
BX537869-1|CAD97871.1| 550|Homo sapiens hypothetical protein pr... 30 4.2
BX284931-2|CAI14231.1| 490|Homo sapiens lin-9 homolog (C. elega... 30 4.2
BX284931-1|CAI14230.1| 692|Homo sapiens lin-9 homolog (C. elega... 30 4.2
BC065302-1|AAH65302.1| 568|Homo sapiens LIN9 protein protein. 30 4.2
BC045625-1|AAH45625.1| 558|Homo sapiens lin-9 homolog (C. elega... 30 4.2
BC043444-1|AAH43444.1| 543|Homo sapiens LIN9 protein protein. 30 4.2
AY786184-1|AAV41873.1| 542|Homo sapiens Lin-9 protein. 30 4.2
AL359742-1|CAI12100.1| 692|Homo sapiens lin-9 homolog (C. elega... 30 4.2
AK126177-1|BAC86475.1| 507|Homo sapiens protein ( Homo sapiens ... 30 4.2
AF190324-1|AAQ13711.1| 542|Homo sapiens type I interferon recep... 30 4.2
AF190323-1|AAQ13710.1| 507|Homo sapiens type I interferon recep... 30 4.2
>X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 239 bits (586), Expect = 3e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
E+EVE++ITIM NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 374 RGMRHYWGLRVRGQH 418
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18
protein.
Length = 82
Score = 122 bits (294), Expect = 7e-28
Identities = 53/65 (81%), Positives = 60/65 (92%)
Frame = +2
Query: 224 MSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLR 403
M NPRQYKIPD FLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAHRG+RH+WGLR
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLR 60
Query: 404 VRGQH 418
VRGQH
Sbjct: 61 VRGQH 65
>BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein.
Length = 74
Score = 95.5 bits (227), Expect = 1e-19
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = +2
Query: 248 IPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 418
+P FLNRQKD+ DGKYSQ+ ++ LD+KL EDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 1 MPAWFLNRQKDVKDGKYSQVLANGLDNKLCEDLERLKKIRARRGLRHFWGLRVRGQH 57
>BX248408-4|CAM26259.1| 34|Homo sapiens ribosomal protein S18
protein.
Length = 34
Score = 63.7 bits (148), Expect = 4e-10
Identities = 27/34 (79%), Positives = 33/34 (97%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 115
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIK 34
>AY536376-1|AAT66049.1| 34|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.21 protein.
Length = 34
Score = 63.7 bits (148), Expect = 4e-10
Identities = 27/34 (79%), Positives = 33/34 (97%)
Frame = +2
Query: 14 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 115
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIK 34
>AF041462-1|AAB99794.1| 348|Homo sapiens I-FLICE isoform 5 protein.
Length = 348
Score = 32.7 bits (71), Expect = 0.78
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNT--NIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR 178
L K++LV PD+ + + + ID K K+ +++G G Y N++ L
Sbjct: 42 LEKLNLVAPDQLDLLEKCLKNIHRIDLKTKIQKYKQSVQGAGTSYRNVLQAAIQKSLKDP 101
Query: 179 AGECTEEEVEKII 217
+ EE V+K I
Sbjct: 102 SNNFREEPVKKSI 114
>BX537869-1|CAD97871.1| 550|Homo sapiens hypothetical protein
protein.
Length = 550
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 354 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 409
>BX284931-2|CAI14231.1| 490|Homo sapiens lin-9 homolog (C. elegans)
protein.
Length = 490
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 294 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 349
>BX284931-1|CAI14230.1| 692|Homo sapiens lin-9 homolog (C. elegans)
protein.
Length = 692
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 496 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 551
>BC065302-1|AAH65302.1| 568|Homo sapiens LIN9 protein protein.
Length = 568
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 372 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 427
>BC045625-1|AAH45625.1| 558|Homo sapiens lin-9 homolog (C. elegans)
protein.
Length = 558
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 362 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 417
>BC043444-1|AAH43444.1| 543|Homo sapiens LIN9 protein protein.
Length = 543
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 347 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 402
>AY786184-1|AAV41873.1| 542|Homo sapiens Lin-9 protein.
Length = 542
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 346 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 401
>AL359742-1|CAI12100.1| 692|Homo sapiens lin-9 homolog (C. elegans)
protein.
Length = 692
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 496 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 551
>AK126177-1|BAC86475.1| 507|Homo sapiens protein ( Homo sapiens
cDNA FLJ44189 fis, clone THYMU2039315, weakly similar
to Caenorhabditis elegans LIN-9L (lin-9) mRNA. ).
Length = 507
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 311 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 366
>AF190324-1|AAQ13711.1| 542|Homo sapiens type I interferon receptor
beta chain-associated protein protein.
Length = 542
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 346 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 401
>AF190323-1|AAQ13710.1| 507|Homo sapiens type I interferon receptor
beta chain-associated protein splice variant protein.
Length = 507
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 5 LTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLD 172
+T++S ++ K +HI ++ N + ++ ++M RRY+ IVL+ ++ D
Sbjct: 311 VTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKD 366
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,280,413
Number of Sequences: 237096
Number of extensions: 1458490
Number of successful extensions: 6624
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6624
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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