Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0939
         (515 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L22959-1|AAA28870.1|  152|Drosophila melanogaster ribosomal prot...   254   7e-68
BT024929-1|ABE01159.1|  152|Drosophila melanogaster IP16603p pro...   254   7e-68
AE013599-2985|AAM68401.1|  152|Drosophila melanogaster CG8900-PB...   254   7e-68
AE013599-2984|AAF57491.1|  152|Drosophila melanogaster CG8900-PA...   254   7e-68
AY118434-1|AAM48463.1|  152|Drosophila melanogaster RH43343p pro...   250   6e-67
BT022499-1|AAY54915.1|  246|Drosophila melanogaster IP07925p pro...    92   4e-19
AY069030-1|AAL39175.1|  433|Drosophila melanogaster GH01429p pro...    28   8.6  
AE014297-2410|AAF55469.1|  433|Drosophila melanogaster CG7379-PA...    28   8.6  

>L22959-1|AAA28870.1|  152|Drosophila melanogaster ribosomal protein
           S18 protein.
          Length = 152

 Score =  254 bits (621), Expect = 7e-68
 Identities = 117/135 (86%), Positives = 129/135 (95%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
           EEEV+K++TI+SNP QYK+P+ FLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 374 RGMRHYWGLRVRGQH 418
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>BT024929-1|ABE01159.1|  152|Drosophila melanogaster IP16603p
           protein.
          Length = 152

 Score =  254 bits (621), Expect = 7e-68
 Identities = 117/135 (86%), Positives = 129/135 (95%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
           EEEV+K++TI+SNP QYK+P+ FLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 374 RGMRHYWGLRVRGQH 418
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>AE013599-2985|AAM68401.1|  152|Drosophila melanogaster CG8900-PB,
           isoform B protein.
          Length = 152

 Score =  254 bits (621), Expect = 7e-68
 Identities = 117/135 (86%), Positives = 129/135 (95%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
           EEEV+K++TI+SNP QYK+P+ FLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 374 RGMRHYWGLRVRGQH 418
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>AE013599-2984|AAF57491.1|  152|Drosophila melanogaster CG8900-PA,
           isoform A protein.
          Length = 152

 Score =  254 bits (621), Expect = 7e-68
 Identities = 117/135 (86%), Positives = 129/135 (95%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
           EEEV+K++TI+SNP QYK+P+ FLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 374 RGMRHYWGLRVRGQH 418
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>AY118434-1|AAM48463.1|  152|Drosophila melanogaster RH43343p
           protein.
          Length = 152

 Score =  250 bits (613), Expect = 6e-67
 Identities = 116/135 (85%), Positives = 128/135 (94%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
           MSLVIP+KFQ ILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQRILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
           EEEV+K++TI+SNP QYK+P+ FLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 374 RGMRHYWGLRVRGQH 418
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>BT022499-1|AAY54915.1|  246|Drosophila melanogaster IP07925p
           protein.
          Length = 246

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +2

Query: 110 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIP 253
           IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1   IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48


>AY069030-1|AAL39175.1|  433|Drosophila melanogaster GH01429p
           protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 263 LNRQKDIVDGKYSQLTSSNLDSKLREDLER 352
           +N  ++I+DGK  QL +   +  L+ED +R
Sbjct: 97  VNHMQEIIDGKLRQLDTDQQNLDLKEDRDR 126


>AE014297-2410|AAF55469.1|  433|Drosophila melanogaster CG7379-PA
           protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 263 LNRQKDIVDGKYSQLTSSNLDSKLREDLER 352
           +N  ++I+DGK  QL +   +  L+ED +R
Sbjct: 97  VNHMQEIIDGKLRQLDTDQQNLDLKEDRDR 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,195,514
Number of Sequences: 53049
Number of extensions: 433918
Number of successful extensions: 1205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)