Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0939
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   216   9e-57
U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    27   8.0  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  216 bits (527), Expect = 9e-57
 Identities = 97/135 (71%), Positives = 118/135 (87%)
 Frame = +2

Query: 14  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 193
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 194 EEEVEKIITIMSNPRQYKIPD*FLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 373
           EE+ +KI+TIM NP QYKIP+ FLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 374 RGMRHYWGLRVRGQH 418
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical
           protein C09B9.7 protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 218 TIMSNPRQYKIPD*FLNRQK-DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 394
           +I  NP    + +  LNR      D KY    SS+++  ++ DLE+LKKI   + ++ Y 
Sbjct: 111 SIRDNPVSQSLANILLNRDTAPYYDYKY---LSSDIELMVK-DLEKLKKINKEKTLKMY- 165

Query: 395 GLRVRG 412
           GL   G
Sbjct: 166 GLLAHG 171


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 97   CDDGYQRCWPEVLQHCS 147
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 364 SRSQRDATLLGPSCAWSAH*DYWQERKNCXCIKEEVNXTNXKXNXKKKKK 513
           +R  R   ++ P C+      +++  KN   + +E N  N   N K +KK
Sbjct: 4   TRKIRKNRMMKPCCSTVCEMSHFEMSKNLQVLPKEQNKRNQSENAKLRKK 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,961,301
Number of Sequences: 27780
Number of extensions: 222021
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)