Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0931
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   0.94 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   5.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 20/73 (27%), Positives = 28/73 (38%)
 Frame = +1

Query: 31  IQNTTLGVHRRTHTSRTGHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 210
           I  T L      H     H        + C  L   GF+++     KIV +S +     G
Sbjct: 80  IYQTLLSGKNHPHIQLPKHVDQYLLEQLVCEQL--GGFLLILTPNGKIVFVSHTVEHLLG 137

Query: 211 HAKVHLVGIDIFN 249
           H +  L+G  IFN
Sbjct: 138 HLQTDLMGQSIFN 150


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 144 TSPLSVSTSPPGKPATSTASQNLSSP 169


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 144 TSPLSVSTSPPGKPATSTASQNLSSP 169


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 144 TSPLSVSTSPPGKPATSTASQNLSSP 169


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 144 TSPLSVSTSPPGKPATSTASQNLSSP 169


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 100 TSPLSVSTSPPGKPATSTASQNLSSP 125


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 144 TSPLSVSTSPPGKPATSTASQNLSSP 169


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 TSKSRMVTSPHSCVLTSTAARNCCAP 466
           TS   + TSP     TSTA++N  +P
Sbjct: 144 TSPLSVSTSPPGKPATSTASQNLSSP 169


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 464 VHNNSLPLSKSVRNCVARSPSG 399
           ++NN++ L K + N   ++P+G
Sbjct: 203 INNNNIELYKEIFNGKRKNPNG 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,416
Number of Sequences: 336
Number of extensions: 3374
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)