BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0931 (649 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 205 5e-54 SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 204 1e-53 SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.1 SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 3.1 SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 3.1 SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 3.1 SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 3.1 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 4.1 SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 26 5.4 SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 7.1 SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 9.4 >SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 205 bits (500), Expect = 5e-54 Identities = 89/147 (60%), Positives = 117/147 (79%) Frame = +1 Query: 82 GHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKY 261 G +GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG+KY Sbjct: 12 GEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKY 71 Query: 262 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLATQLRTDFD 441 ED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+L ++ FD Sbjct: 72 EDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEGFD 130 Query: 442 SGKELLCTVLKSCGEECVIPSKQTQXS 522 G++L+ TV+ + GEE + + S Sbjct: 131 EGRDLIITVVSAMGEETALACRDAPSS 157 >SPBC336.10c |tif512||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 204 bits (497), Expect = 1e-53 Identities = 88/139 (63%), Positives = 115/139 (82%) Frame = +1 Query: 82 GHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKY 261 G +GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG+KY Sbjct: 12 GEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKY 71 Query: 262 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLATQLRTDFD 441 ED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+L ++ F+ Sbjct: 72 EDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEGFE 130 Query: 442 SGKELLCTVLKSCGEECVI 498 GK+L+ TV+ + GEE + Sbjct: 131 EGKDLIITVVSAMGEEIAL 149 >SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1729 Score = 26.6 bits (56), Expect = 3.1 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +1 Query: 286 NMDVPHVKREDYQLTDISDDGYL 354 NM +P+++ E Q+ D + D YL Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990 >SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizosaccharomyces pombe|chr 1|||Manual Length = 449 Score = 26.6 bits (56), Expect = 3.1 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 109 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 261 P +CS ++ ++ C V G+ H H++G+D+ NG Y Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86 >SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 981 Score = 26.6 bits (56), Expect = 3.1 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 202 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 321 K A L+ D F+G ++ IC S N+ + V ED+ Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917 >SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 594 Score = 26.6 bits (56), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 193 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 318 K G+H A +++ + N K +D CPST D+ H+ R D Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206 >SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 204 Score = 26.6 bits (56), Expect = 3.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 Query: 141 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 236 + + E +Q C N+ +N +A R SS GWD Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 26.2 bits (55), Expect = 4.1 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 52 VHRRTHTSRTGHSGASATF 108 VHR T R GH+G + TF Sbjct: 753 VHRVGRTGRAGHTGVAVTF 771 >SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 493 Score = 25.8 bits (54), Expect = 5.4 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Frame = +1 Query: 439 DSGKELLCTV-LKSCGEECVIPSK 507 D E CT+ SCG+ CV P++ Sbjct: 280 DQAVESFCTIKFNSCGQVCVCPNR 303 >SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosaccharomyces pombe|chr 1|||Manual Length = 875 Score = 25.4 bits (53), Expect = 7.1 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 Query: 304 VKREDYQLTDISDDGYL 354 +KREDY+LT ++ GYL Sbjct: 91 IKREDYELTLCANCGYL 107 >SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharomyces pombe|chr 2|||Manual Length = 402 Score = 25.0 bits (52), Expect = 9.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 285 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 196 +CG T +FI E+I+P V VL G Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,611,631 Number of Sequences: 5004 Number of extensions: 54700 Number of successful extensions: 180 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 178 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 291768710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -