Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0931
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 89 9e-33
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 29 4.3
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 5.7
SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4) 28 5.7
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 28 7.5
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 89.4 bits (212), Expect(2) = 9e-33
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = +1
Query: 79 TGHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 222
+G SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 597 SGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 68.9 bits (161), Expect(2) = 9e-33
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +1
Query: 322 QLTDISDDGYLTLMADNGDLREDLKIPDGDLATQLRTDFDSGKELLCTVLKSCGEECVIP 501
++T+I +DGYL LM DNGD R D+K+ D D+A ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 502 SK 507
K
Sbjct: 703 VK 704
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 252
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 584 VVHCKKLKVCXPYKCSVGLFVEXCV--CFDGXTHSSPQDFSTVHNNSLPLSKSVRNCV 417
V HC+ +C P + + +F C CF S + VH + P++ S R CV
Sbjct: 1081 VPHCELRSMCFPSRTHIDVFSIACSWRCFPHRVFMSVFSYHRVHVDVFPITCSCR-CV 1137
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 247 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 375
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 289 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLATQLRTDFDSGKEL 456
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 457 LCTVLKSCGEEC 492
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -1
Query: 145 RNRFYAGPNIAW--GRWLRPRSVRSSK 71
R F+ PN+A G+WL P+S+R+S+
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASR 973
>SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)
Length = 1209
Score = 28.3 bits (60), Expect = 5.7
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 1/128 (0%)
Frame = +1
Query: 61 RTHTSRTGHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
R +SRTG G S + N +K P E + GKH AK H
Sbjct: 677 RAGSSRTGSEGVMDDLDSTMSNVENN----IKEAPLGTSE-ARGNAGKHIEAKPHKKYDR 731
Query: 241 IFNGKKYE-DICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLA 417
I NGKK + P+ N + ED +T GY + + G + + K+P D
Sbjct: 732 IINGKKKRFGLLPTEENF----IFNEDGSVT--PKPGY--SLGEKGYVGDISKLPGMDSD 783
Query: 418 TQLRTDFD 441
+ D D
Sbjct: 784 EHFQIDVD 791
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +1
Query: 274 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLATQLRTDFDSGKE 453
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 454 LLCTVLKSCGEECV 495
T KS GEE V
Sbjct: 344 SAATYGKSDGEENV 357
>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 872
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +1
Query: 265 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLATQLRT 432
D+ S H +D+P+ E++ + +D ++ +D L E L+IPD T +
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDR--LTLYQR 648
Query: 433 DFDSGKELLCTVLKSCGEEC 492
SG E LC VLK C
Sbjct: 649 SVCSGLEALCIVLKRLAYPC 668
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,438,224
Number of Sequences: 59808
Number of extensions: 463309
Number of successful extensions: 1202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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