Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0931
(649 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.5
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.5
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.4
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 4.4
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 22 5.9
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 22 5.9
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 22 5.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 455 NSLPLSKSVR--NCVARSPSGILRSSRRSPLSAIR 357
N L + +R N A PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 238 DIFNGKKYEDIC 273
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 203 FPVLDVDISTILHGR 159
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 22.2 bits (45), Expect = 4.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -1
Query: 124 PNIAWGRWLRPRSVRSSKCVF 62
P I W R +R V KC F
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPF 200
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +2
Query: 182 CPHPKPESTATLKFTWLGLISSMVKSM 262
CP P TWLG ++S + +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +2
Query: 182 CPHPKPESTATLKFTWLGLISSMVKSM 262
CP P TWLG ++S + +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +2
Query: 182 CPHPKPESTATLKFTWLGLISSMVKSM 262
CP P TWLG ++S + +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 431 VRNCVARSPSGILRS 387
V +C+ARSP+G + S
Sbjct: 78 VYSCLARSPAGSVHS 92
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,073
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -