Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0931
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 188 2e-48
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 183 8e-47
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 179 1e-45
At1g56345.1 68414.m06477 pseudouridine synthase family protein l... 32 0.38
At3g05830.1 68416.m00654 expressed protein 30 1.5
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 2.0
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 29 3.5
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot... 28 6.1
At3g06490.1 68416.m00753 myb family transcription factor (MYB108... 28 6.1
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00... 27 8.1
At2g30700.1 68415.m03745 expressed protein 27 8.1
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 27 8.1
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 188 bits (459), Expect = 2e-48
Identities = 81/142 (57%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Frame = +1
Query: 67 HTSRTGHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 246
H + +GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6 HHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65
Query: 247 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LATQ 423
KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L Q
Sbjct: 66 TSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQ 125
Query: 424 LRTDFDSGKELLCTVLKSCGEE 489
+++ FD GK+L+ +V+ + GEE
Sbjct: 126 IKSGFDDGKDLVVSVMSAMGEE 147
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 183 bits (446), Expect = 8e-47
Identities = 81/149 (54%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +1
Query: 67 HTSRTGHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 246
H + +GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6 HHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65
Query: 247 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLATQ 423
KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L TQ
Sbjct: 66 TSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQ 125
Query: 424 LRTDFDSGKELLCTVLKSCGEECVIPSKQ 510
L+ F+ GK+++ +V+ + GEE + K+
Sbjct: 126 LKNGFEEGKDIVVSVMSAMGEEQMCALKE 154
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 179 bits (436), Expect = 1e-45
Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
Frame = +1
Query: 67 HTSRTGHSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 246
H SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6 HHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65
Query: 247 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLATQ 423
KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L Q
Sbjct: 66 TAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQ 125
Query: 424 LRTDFDSGKELLCTVLKSCGEECVIPSKQ 510
+R FD GK+++ +V+ S GEE + K+
Sbjct: 126 MRLGFDEGKDIVVSVMSSMGEEQICAVKE 154
>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 322
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -2
Query: 471 QHGAQQFLAAVEVSTQLCGEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVGY 295
+HGA + AA++V L G +RD E + V+V S + + + D++ ++V G
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232
Query: 294 VHVVCGGTD 268
+ CGG D
Sbjct: 233 RELSCGGDD 241
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/101 (27%), Positives = 48/101 (47%)
Frame = +1
Query: 214 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 393
AK + G+D K ED+ P V+ +D ++T + D+ + LM +G +
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241
Query: 394 KIPDGDLATQLRTDFDSGKELLCTVLKSCGEECVIPSKQTQ 516
K + L Q RTD D K++L L+ C +E +++ Q
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL--KLEFCLQEARSQTRKLQ 280
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 391 LKIPDGDLATQLRTDFDSGKELLCTVLKSCGEEC 492
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +1
Query: 334 ISDDGYLTLMADNG--DLREDLKIPDGDLATQLR----TDFDSGKELLCTV 468
+SD+ L + A G D+ +++ D DL Q++ + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191
>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
contains Pfam profile: PF00450 serine carboxypeptidase;
similar to serine carboxypeptidase I precursor
(SP:P37890) [Oryza sativa]
Length = 436
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -2
Query: 378 VTVVSHQGQVAIIRDISQL---VVFALHVGYVHVVCGGTD-IFILFTIEDINPNQVNFSV 211
+ ++ H +IIR + + F L GY+ V D +F F + NP + V
Sbjct: 16 LVLIQHADSSSIIRYLPGFEGPLPFELETGYIGVGQKEEDQLFYYFIKSENNPEEDPLLV 75
Query: 210 AVLSGFGCGHFNNLAW 163
+ G GC F+ L +
Sbjct: 76 WLTGGPGCSSFSGLVY 91
>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
identical to transcription factor MYB108 GI:15375290
from [Arabidopsis thaliana]
Length = 323
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 164 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYPT*SAKTTN 325
HA+ LKC + T+K+ W+ + ++S S TT T T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177
>At3g26000.1 68416.m03239 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 453
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 125 AEHCMGKVAEAPECPVLEVCVLRC 54
AE C GK + EC +C+ RC
Sbjct: 396 AEDCKGKKKGSEECRACSLCIQRC 419
>At2g30700.1 68415.m03745 expressed protein
Length = 480
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 449 RNCCAPC*NPAVRSAXSRQSKHXSRQINQLSIYRXNKLLIFYNEQLLHKCKNIIFXY 619
+ CC P PA+ A S H +++ + N N ++ CKN++F Y
Sbjct: 229 KECCRPICQPAIMEAALIISGHQMTVGDKIPLAGSN------NVNAINDCKNVVFSY 279
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 262 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLATQLRTDFD 441
++I S MDV + + D ++DGYL + DL+E +G + T T+FD
Sbjct: 147 QNIDISRKRMDVAALDMLQFHWWDYANDGYLDALKHLTDLKE-----EGKIKTVALTNFD 201
Query: 442 S 444
+
Sbjct: 202 T 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,136
Number of Sequences: 28952
Number of extensions: 295776
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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