Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0928
(450 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 228 5e-59
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 221 7e-57
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 166 8e-54
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 202 3e-51
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 180 2e-44
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 171 8e-42
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 169 2e-41
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 159 3e-38
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 91 1e-36
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 153 1e-36
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 148 6e-35
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 116 2e-25
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 89 5e-17
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 88 7e-17
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 87 1e-16
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 85 9e-16
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 84 1e-15
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 84 2e-15
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 81 1e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 80 2e-14
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 79 3e-14
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 77 2e-13
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 74 1e-12
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 73 4e-12
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 70 2e-11
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 68 1e-10
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 66 3e-10
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 63 2e-09
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 63 2e-09
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 60 3e-08
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 54 1e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 54 1e-06
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 50 3e-05
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.019
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.13
UniRef50_Q015Z3 Cluster: ABC transporter family protein; n=2; Os... 35 0.71
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 34 1.6
UniRef50_Q63XE5 Cluster: Putative uncharacterized protein; n=19;... 33 2.2
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 32 5.0
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 5.0
UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protei... 32 6.6
UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 6.6
UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6
UniRef50_UPI00015B5257 Cluster: PREDICTED: similar to odorant-bi... 31 8.8
UniRef50_A6TKL5 Cluster: Pyruvate formate-lyase; n=1; Alkaliphil... 31 8.8
UniRef50_A4Y0X1 Cluster: Peptidoglycan-binding LysM; n=1; Pseudo... 31 8.8
UniRef50_Q5JED7 Cluster: Putative uncharacterized protein; n=1; ... 31 8.8
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 228 bits (557), Expect = 5e-59
Identities = 105/142 (73%), Positives = 116/142 (81%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
PKH L PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K
Sbjct: 75 KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIKV 448
+P+LVTHD RTIRYPDPLIKV
Sbjct: 135 GIPHLVTHDARTIRYPDPLIKV 156
Score = 41.1 bits (92), Expect = 0.011
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
HLKR+ APK WMLDKL GV+AP
Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAP 29
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 221 bits (539), Expect = 7e-57
Identities = 100/124 (80%), Positives = 110/124 (88%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+
Sbjct: 31 PSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVI 90
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430
++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYP
Sbjct: 91 TLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYP 150
Query: 431 DPLI 442
DPLI
Sbjct: 151 DPLI 154
Score = 48.0 bits (109), Expect = 9e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
HLKRL APKAWMLDKLGGV+AP
Sbjct: 8 HLKRLAAPKAWMLDKLGGVFAP 29
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 166 bits (403), Expect(2) = 8e-54
Identities = 79/106 (74%), Positives = 85/106 (80%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
PKH L PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 340
KVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 75 KVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 66.5 bits (155), Expect(2) = 8e-54
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +2
Query: 338 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 448
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKV 188
Score = 41.1 bits (92), Expect = 0.011
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
HLKR+ APK WMLDKL GV+AP
Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAP 29
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 202 bits (493), Expect = 3e-51
Identities = 95/141 (67%), Positives = 108/141 (76%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
PKH L PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIK 445
+PYL T+DGRTIRYPDPLIK
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIK 155
Score = 48.0 bits (109), Expect = 9e-05
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKRLNAPK WMLDKLGG +AP + P +R P
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLP 43
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 180 bits (437), Expect = 2e-44
Identities = 83/144 (57%), Positives = 103/144 (71%)
Frame = +2
Query: 17 TLPKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 196
T P H A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+KV
Sbjct: 27 TAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKV 86
Query: 197 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 376
DGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G
Sbjct: 87 DGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIG 146
Query: 377 PKNVPYLVTHDGRTIRYPDPLIKV 448
K +P++VTHDGRTI Y DP ++V
Sbjct: 147 AKGIPHVVTHDGRTISYVDPSVRV 170
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 171 bits (415), Expect = 8e-42
Identities = 77/138 (55%), Positives = 97/138 (70%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
P H + L PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK+DG
Sbjct: 15 PHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
K+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G
Sbjct: 75 KIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTG 134
Query: 383 NVPYLVTHDGRTIRYPDP 436
+PY+VTHDGRTIRYP P
Sbjct: 135 AIPYIVTHDGRTIRYPHP 152
Score = 42.3 bits (95), Expect = 0.005
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
HLKRLNAP WML KLGG +AP
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAP 29
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 169 bits (412), Expect = 2e-41
Identities = 81/126 (64%), Positives = 95/126 (75%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVDGK+RTD P MDV+
Sbjct: 42 PSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVI 100
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430
SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+P
Sbjct: 101 SIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHP 160
Query: 431 DPLIKV 448
D LIKV
Sbjct: 161 DSLIKV 166
Score = 33.9 bits (74), Expect = 1.6
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYA--PST 72
HLKR+ A + WMLDKL GV+A PST
Sbjct: 19 HLKRVAALQHWMLDKLTGVFAARPST 44
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 159 bits (386), Expect = 3e-38
Identities = 74/128 (57%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMD 244
PS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MD
Sbjct: 141 PSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMD 200
Query: 245 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 424
VV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR
Sbjct: 201 VVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIR 260
Query: 425 YPDPLIKV 448
+P+P IK+
Sbjct: 261 FPNPEIKI 268
Score = 41.9 bits (94), Expect = 0.006
Identities = 15/20 (75%), Positives = 20/20 (100%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVY 60
HLKR+NAPK+WML+KLGG++
Sbjct: 89 HLKRINAPKSWMLNKLGGIW 108
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 90.6 bits (215), Expect(2) = 1e-36
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 290 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 448
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKM 128
Score = 84.6 bits (200), Expect(2) = 1e-36
Identities = 41/61 (67%), Positives = 44/61 (72%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
PKH L PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDG 74
Query: 203 K 205
K
Sbjct: 75 K 75
Score = 39.1 bits (87), Expect = 0.044
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
HLK + APK WMLDKL GV+AP
Sbjct: 8 HLKHVAAPKHWMLDKLTGVFAP 29
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 153 bits (372), Expect = 1e-36
Identities = 70/124 (56%), Positives = 93/124 (75%)
Frame = +2
Query: 74 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 253
S+GPHK + +PLVI +RN+LKY+ E L I+K+ I VDGKVR D +PAG MDV+S
Sbjct: 32 SSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPAGVMDVIS 91
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
I+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+
Sbjct: 92 IKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPN 151
Query: 434 PLIK 445
LIK
Sbjct: 152 LLIK 155
Score = 43.2 bits (97), Expect = 0.003
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
H KRLNAPK W+L+KLGG++AP
Sbjct: 8 HYKRLNAPKKWLLNKLGGIWAP 29
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 148 bits (358), Expect = 6e-35
Identities = 70/122 (57%), Positives = 83/122 (68%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
P GPHKLRECLPL++ +RNRLKYAL E I++Q L+ VD R D YPAGFMDVV
Sbjct: 28 PRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPAGFMDVV 87
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYP
Sbjct: 88 EIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYP 147
Query: 431 DP 436
DP
Sbjct: 148 DP 149
Score = 39.9 bits (89), Expect = 0.025
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAP 66
HLKRL APK WML KL GV+AP
Sbjct: 5 HLKRLYAPKDWMLSKLTGVFAP 26
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 116 bits (280), Expect = 2e-25
Identities = 56/125 (44%), Positives = 84/125 (67%)
Frame = +2
Query: 68 VPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 247
+P++GPHK EC+PL + L+YA E+ I+ ++ IKV+G+VRT+ +P G DV
Sbjct: 30 MPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDV 89
Query: 248 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 427
VSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+
Sbjct: 90 VSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRF 148
Query: 428 PDPLI 442
DP I
Sbjct: 149 CDPAI 153
Score = 38.3 bits (85), Expect = 0.076
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYA 63
HLKR APK+WMLDK GG +A
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFA 28
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 88.6 bits (210), Expect = 5e-17
Identities = 45/117 (38%), Positives = 64/117 (54%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PS GPH L +P+ I LR+ YA T E +I+ R+I+VDG+V TD +P G MDV+
Sbjct: 34 PSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVGLMDVL 93
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
I + +R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 94 HIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 88.2 bits (209), Expect = 7e-17
Identities = 50/125 (40%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
P GPH + LPL++ +RN L YA T E K++ + +VDG VR D +P GFMDV+
Sbjct: 32 PRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVI 91
Query: 251 SIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-- 421
+ T E FR++ Y VK F +H I EE K +++ T L HDGR I
Sbjct: 92 EVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILV 150
Query: 422 RYPDP 436
R DP
Sbjct: 151 RVKDP 155
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 87.4 bits (207), Expect = 1e-16
Identities = 46/117 (39%), Positives = 65/117 (55%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PS GPH L LPL + +R+ LKYA T +E I+ + +KVDG VR D +P G MDV+
Sbjct: 27 PSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVI 86
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
I T E++R++ D + + I+ EEA KL +V+ L HDGR +
Sbjct: 87 EIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNL 143
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 84.6 bits (200), Expect = 9e-16
Identities = 45/117 (38%), Positives = 59/117 (50%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PS GPH +PL + LR+ YA T E I+ + +KVDGKVR D YP G MDV+
Sbjct: 26 PSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVI 85
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
+ NE +R+I D RI EA K+C+++ L HDGR I
Sbjct: 86 ELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNI 142
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 84.2 bits (199), Expect = 1e-15
Identities = 42/117 (35%), Positives = 65/117 (55%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PS G H + L L + +R+ LK A E +I+ + VDG+V D +P GFMD++
Sbjct: 32 PSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDII 91
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 92 EIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNV 146
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.8 bits (198), Expect = 2e-15
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
P GPH + +PL+I +R+ L YA E KI+ + I VDG VR +P +P G MDVV
Sbjct: 35 PYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVV 94
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IR 424
I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 95 EIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVE 154
Query: 425 YPDP 436
DP
Sbjct: 155 IEDP 158
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 80.6 bits (190), Expect = 1e-14
Identities = 46/114 (40%), Positives = 59/114 (51%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDVV I
Sbjct: 29 GPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIP 88
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
+ R+I D T I+ E+AKYK ++ T V L DGR I
Sbjct: 89 SADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNI 142
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 80.2 bits (189), Expect = 2e-14
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PS GPH + + LPL++ +R+ LKYA E KI++ I +DG R + +PAG MDV+
Sbjct: 32 PSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVL 91
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGR 415
SI + +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDGR
Sbjct: 92 SIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QLNLHDGR 144
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 79.4 bits (187), Expect = 3e-14
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTI 421
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTI 144
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 77.0 bits (181), Expect = 2e-13
Identities = 44/126 (34%), Positives = 65/126 (51%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GFMDV+
Sbjct: 27 PNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI 86
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 430
I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 87 EIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITD 144
Query: 431 DPLIKV 448
D KV
Sbjct: 145 DKSKKV 150
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 74.1 bits (174), Expect = 1e-12
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
PS GPH +P+ ++LR+ L A EV ++ + VDG+ D +P G DV+
Sbjct: 32 PSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVL 91
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRT 418
+I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +T DGRT
Sbjct: 92 AIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRT 147
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 72.5 bits (170), Expect = 4e-12
Identities = 40/117 (34%), Positives = 59/117 (50%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 250
P G H +PLV+ LR+ LK A +E+ KI+ + + VDGKVR D Y G D +
Sbjct: 28 PMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTI 87
Query: 251 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
SI N +R++ + G+F H + +A K+CK+ L HDG T+
Sbjct: 88 SIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTM 142
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 70.1 bits (164), Expect = 2e-11
Identities = 43/139 (30%), Positives = 67/139 (48%)
Frame = +2
Query: 17 TLPKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 196
T+P+ T + P+ G H C+PL + LR+ L A E +++ R + V
Sbjct: 10 TMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVLV 69
Query: 197 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 376
DG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 70 DGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMGKSTI 127
Query: 377 PKNVPYLVTHDGRTIRYPD 433
+ HDGR I D
Sbjct: 128 TDGKTQIHLHDGRNILVSD 146
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 67.7 bits (158), Expect = 1e-10
Identities = 36/114 (31%), Positives = 57/114 (50%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
GPH LPL + +R+ LK E +I+ + + VDG R D +P G DV+++
Sbjct: 29 GPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLP 88
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
NE +R++ D KGR ++++ E KLC++ T L +DG I
Sbjct: 89 LVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNI 141
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 66.5 bits (155), Expect = 3e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
GPH LP+ ++LR + A +EV KI+ QR + V+G+ D G D+VSI
Sbjct: 30 GPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGVFDIVSIP 88
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 373
K + +R+ DVKG I E AK +LCK++ T
Sbjct: 89 KLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 63.3 bits (147), Expect = 2e-09
Identities = 33/100 (33%), Positives = 56/100 (56%)
Frame = +2
Query: 74 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 253
S+GPH LP+ I+LR+ +++AL EV KI+ R + ++G + TD D++S
Sbjct: 27 SSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDVFDIIS 85
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 373
K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 86 FPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 63.3 bits (147), Expect = 2e-09
Identities = 33/125 (26%), Positives = 58/125 (46%)
Frame = +2
Query: 74 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 253
S+GPH + + L+ ++ A E K+VK + V+GK +P MD +S
Sbjct: 32 SSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTIS 91
Query: 254 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++
Sbjct: 92 FPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINY 151
Query: 434 PLIKV 448
IKV
Sbjct: 152 AKIKV 156
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 59.7 bits (138), Expect = 3e-08
Identities = 28/94 (29%), Positives = 51/94 (54%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
GPH + +PL + LR+ L E +++ + + VDG R D +P G MD+++I
Sbjct: 30 GPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIITIP 89
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 361
N +R++ D K R ++++ A KLC+++
Sbjct: 90 LNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 54.4 bits (125), Expect = 1e-06
Identities = 37/114 (32%), Positives = 54/114 (47%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
G HK +PL+I LR+ LK E+ +I+ L+ VDGKV + GFMD +++
Sbjct: 30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVS 89
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
+ L + YD KG+ I E KL +VK + HDG T+
Sbjct: 90 GNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTM 141
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 54.0 bits (124), Expect = 1e-06
Identities = 34/118 (28%), Positives = 54/118 (45%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
GPH +PL+I LR+ L YA E + + + ++GK +D P G D+++
Sbjct: 30 GPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFT 88
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 433
+ E +R+ GR + I P+ A+ KL K+ L HDG T+ D
Sbjct: 89 EREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVED 146
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 49.6 bits (113), Expect = 3e-05
Identities = 30/114 (26%), Positives = 50/114 (43%)
Frame = +2
Query: 80 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 259
G H +P + LR+ L T E K + ++VDG RT + G MDVV +
Sbjct: 35 GAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELG 94
Query: 260 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 421
T +++R++ +I E K+C+V + + HDGR++
Sbjct: 95 GTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSKTSISGGRTQIGFHDGRSL 148
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.019
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +2
Query: 74 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 253
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 254 IEKTNELFRLIYDVKG 301
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.13
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 274 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 95
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 94 QLV 86
Q +
Sbjct: 110 QFI 112
>UniRef50_Q015Z3 Cluster: ABC transporter family protein; n=2;
Ostreococcus|Rep: ABC transporter family protein -
Ostreococcus tauri
Length = 1328
Score = 35.1 bits (77), Expect = 0.71
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 22 PKAWMLDKLGGVYAPSTVNRSPQVARVLAPGDFPEESSEVCFD 150
P +WMLD LGG + T N+S + A + G+ SS + D
Sbjct: 953 PASWMLDVLGGSDSSGTANKSDKQAIINGKGNMRRSSSGIALD 995
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 33.9 bits (74), Expect = 1.6
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -3
Query: 442 DKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFIS 263
D + V +GAA+++ R+ L QLVL D V ES+L ++D + FI+
Sbjct: 127 DHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIA 186
Query: 262 LLN*DNI 242
L + D++
Sbjct: 187 LFDGDDV 193
>UniRef50_Q63XE5 Cluster: Putative uncharacterized protein; n=19;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 1094
Score = 33.5 bits (73), Expect = 2.2
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 167 SGLRFRSKHTSDDSSGKSPGASTRATCGDRLTVLGAYTPPSLSNIHALGA 18
S ++ S +TS +S S A TRA D V+GA++PP + N AL A
Sbjct: 160 SDMQLASLYTSQGNSAASSVAVTRAKAVDA-AVVGAFSPPQMPNPSALPA 208
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 32.3 bits (70), Expect = 5.0
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 71 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 247
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 248 VSIEKTNELFRLIYDVKGRFTI 313
+ E+ +E + IYD+ R T+
Sbjct: 375 IPKEELSEKEKEIYDLIARRTL 396
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 221 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 367
+YPA + D I + E+FRL+ + + RI + K C ++RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
>UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protein
znuA; n=4; canis group|Rep: High-affinity zinc uptake
system protein znuA - Ehrlichia ruminantium (strain
Gardel)
Length = 287
Score = 31.9 bits (69), Expect = 6.6
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 284 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 409
+YD R TI RIT E A+ K+K++ K PY+VTHD
Sbjct: 153 VYDKNARLTIIRIT-ELAE----KIKQLLNTVKTKPYVVTHD 189
>UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1926
Score = 31.9 bits (69), Expect = 6.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 346 LVLSLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRISRVSPNFPI 197
+V + D +D + LNI D T+QFIS D K + +S ++ NF I
Sbjct: 295 IVYKMRNKDQIDIVTDLNITDQTQQFISFNISDYSFKQTSVSILNSNFTI 344
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 31.9 bits (69), Expect = 6.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 430 WV-ADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNI 290
WV G RY+ R R+ H + + +LL D VDCE+ LNI
Sbjct: 412 WVRTTGEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLNI 459
>UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 731
Score = 31.9 bits (69), Expect = 6.6
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = -1
Query: 345 LYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 232
+++ASSG + W+ + PL + + R + ++FS + ++NP
Sbjct: 672 IHVASSGFLGWVFDKPLENRLLRAAMVLFSALSVTLNP 709
>UniRef50_UPI00015B5257 Cluster: PREDICTED: similar to
odorant-binding protein 1; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to odorant-binding protein 1 -
Nasonia vitripennis
Length = 134
Score = 31.5 bits (68), Expect = 8.8
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 7 KRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAPGDFPEESSEVCFDRKRS---PENCE 177
++LN A ML K+G + A TVN +VAR P D P++ + + ++ ++CE
Sbjct: 58 EKLNCFSACMLKKVGIMNADGTVNE--EVARAKVPQDLPKDKVDQVINTCKAEVGKDSCE 115
Query: 178 T 180
T
Sbjct: 116 T 116
>UniRef50_A6TKL5 Cluster: Pyruvate formate-lyase; n=1; Alkaliphilus
metalliredigens QYMF|Rep: Pyruvate formate-lyase -
Alkaliphilus metalliredigens QYMF
Length = 806
Score = 31.5 bits (68), Expect = 8.8
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 155 NEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD-------VKGRFTI 313
NE++KI +++ PT G + TNEL L+ + +FT+
Sbjct: 331 NEIIKIQASESVRIHPGFPMTPTVTIGGQTPEGEDATNELSYLMLNSQEHIRLTNPQFTV 390
Query: 314 --HRITPEEAKYKLCKVKRVATG 376
H+ TPE+ K ++ +V ++ TG
Sbjct: 391 RFHKDTPEDFKLRVVEVVKLGTG 413
>UniRef50_A4Y0X1 Cluster: Peptidoglycan-binding LysM; n=1;
Pseudomonas mendocina ymp|Rep: Peptidoglycan-binding
LysM - Pseudomonas mendocina ymp
Length = 744
Score = 31.5 bits (68), Expect = 8.8
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +2
Query: 152 GNEVLKIVKQRL-IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI----YDVKGRFTIH 316
G+ + I + RL + G++ P GF VV +EKT EL +L+ DV R+ +
Sbjct: 590 GDFGITIARDRLAVNCKGRLVFGPGASGGFSTVVDLEKTYELLKLVCEALADVDYRYLL- 648
Query: 317 RITPEEAKYKLCKVKRVATGP 379
++ E Y + +VA+ P
Sbjct: 649 GVSQEAFNYMAWGLYQVASAP 669
>UniRef50_Q5JED7 Cluster: Putative uncharacterized protein; n=1;
Thermococcus kodakarensis KOD1|Rep: Putative
uncharacterized protein - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 164
Score = 31.5 bits (68), Expect = 8.8
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVK 298
+++RLI ++GKV+ AGF D V I K EL +LI YD K
Sbjct: 70 MRKRLIMLEGKVKHAEAGYAGFFDRVKI-KEKELEKLIEYDAK 111
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,144,618
Number of Sequences: 1657284
Number of extensions: 9706984
Number of successful extensions: 28816
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 27966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28806
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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