Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0928
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 223 1e-59
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 222 2e-59
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 221 3e-59
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.0
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 4.1
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 5.4
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 5.4
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 7.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.1
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 7.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 7.1
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 7.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 24 9.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 9.4
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 9.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 24 9.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 223 bits (545), Expect = 1e-59
Identities = 103/142 (72%), Positives = 114/142 (80%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
P H L+ PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIKV 448
VP+LVTHDGRTIRYPDPLIKV
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKV 156
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKR+ AP W+LDKL G YAP + P AR P
Sbjct: 8 HLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLP 43
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 222 bits (542), Expect = 2e-59
Identities = 102/142 (71%), Positives = 114/142 (80%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
P H L+ PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIKV 448
VP+LVTHDGRTIRYPDPLIKV
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKV 156
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKR+ AP W+LDKL G YAP + P AR P
Sbjct: 8 HLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLP 43
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 221 bits (541), Expect = 3e-59
Identities = 102/142 (71%), Positives = 114/142 (80%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
P H L+ PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLI+VDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIKV 448
VP+LVTHDGRTIRYPDPLIKV
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKV 156
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKR+ AP W+LDKL G YAP + P AR P
Sbjct: 8 HLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLP 43
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 235 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 80
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 176 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 355
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 356 VK-RVATGPKNVPYLVTHDGR 415
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 1.8
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 242 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 418
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 419 IR 424
++
Sbjct: 1778 LK 1779
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 337 SLLRGDTVDCESALNIID*TKQ 272
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 110 LVIFLRNRLKYALTGNEVLKIV 175
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 126 LRKITRGKHSRNLWGPVDGTRCIHTA 49
L+ I N+WG DG CIH A
Sbjct: 306 LKAINAYDFDDNIWGYDDGDLCIHFA 331
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 228 G*VGSVLTFPSTFMRRCFTIFR 163
G +G LTFP+ +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 64 PSTVNRSPQVARVLAPGDFPEESSEV 141
PST NR Q A PE+SS++
Sbjct: 1263 PSTTNRKQQTLLEFAASKEPEKSSDI 1288
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 126 LRKITRGKHSRNLWGPVDGTRCIHTAK-FVQHPC 28
LR I S WG DG C+H A FV C
Sbjct: 306 LRSINAYDSSDPAWGYEDGDLCVHFAGCFVFQTC 339
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -3
Query: 223 SRVSPNFPINLYEALFHNFQDFVSGQSIL 137
S++ P I+LY L+H+ +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 158 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 331
EV K+ ++ I+ G DP+Y +D +S+++ + RL+ D + + R+ E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250
Query: 332 EAKYKLCKVKRV 367
+C + +
Sbjct: 251 NIMLTMCPLSNL 262
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 409 WPHHPLPRPTYQSQ 450
WPHH LP + SQ
Sbjct: 265 WPHHNLPSQFFTSQ 278
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 95 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 196
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 113 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 229
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 414 RPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVN 304
+P C Y T +G L HN L SG+ WI N
Sbjct: 81 KPPC--SYATLIGLAI--LQSHNKQLTLSGIYTWIRN 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,826
Number of Sequences: 5004
Number of extensions: 40555
Number of successful extensions: 127
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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