Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0928
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 194 2e-50
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 192 1e-49
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 191 3e-49
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 30 0.75
08_01_0326 + 2928668-2928821,2931530-2931741,2931835-2931927,293... 28 3.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 3.0
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 5.3
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 27 9.2
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 194 bits (474), Expect = 2e-50
Identities = 91/141 (64%), Positives = 105/141 (74%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
P H L PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDG
Sbjct: 31 PSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDG 90
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K
Sbjct: 91 KVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQK 150
Query: 383 NVPYLVTHDGRTIRYPDPLIK 445
+P+L T+DGRTIRYPDPLIK
Sbjct: 151 GIPFLNTNDGRTIRYPDPLIK 171
Score = 47.2 bits (107), Expect = 6e-06
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKRLNAP WMLDKLGG +AP + P AR P
Sbjct: 24 HLKRLNAPSHWMLDKLGGAFAPKP-SSGPHKARECLP 59
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 192 bits (467), Expect = 1e-49
Identities = 88/141 (62%), Positives = 105/141 (74%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
PKH L PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIK 445
+PYL T+DGRTIRYPDPLIK
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIK 155
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKRLNAPK WMLDKLGG +AP + P +R P
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLP 43
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 191 bits (465), Expect = 3e-49
Identities = 87/141 (61%), Positives = 105/141 (74%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
PKH L PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 383 NVPYLVTHDGRTIRYPDPLIK 445
+PYL T+DGRTIRYPDP+IK
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIK 155
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAP 111
HLKRLNAPK WMLDKLGG +AP + P +R P
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLP 43
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 30.3 bits (65), Expect = 0.75
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 170 FSGLRFRSKHTSDDSSGKSPGASTRATCG--DRLTVLGAYTPP 48
FSGLR S+ S S SP A++ CG D + + PP
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCGGNDAPAAVNGFAPP 51
>08_01_0326 +
2928668-2928821,2931530-2931741,2931835-2931927,
2931997-2932119,2933372-2933650
Length = 286
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 46 LGGVYAPSTVNRSPQVARVLAP 111
L GV + STVN +PQVAR L P
Sbjct: 153 LEGVSSSSTVNLAPQVARDLPP 174
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 275 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 379
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 244 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 149
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 7 KRLNAPKAWMLDKLGGVYAPSTVNRSPQVARVLAPGDFPEES 132
K ++ + M+DKL VY P+ +N +V PG ES
Sbjct: 140 KDISELSSQMMDKLKNVYDPNKINVKTKVVSGSPPGVVAAES 181
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 86 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 226
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,083
Number of Sequences: 37544
Number of extensions: 275742
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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