Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0928
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             224   3e-59
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   2.3  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           27   5.4  
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)            27   7.2  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      27   7.2  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  224 bits (547), Expect = 3e-59
 Identities = 106/142 (74%), Positives = 116/142 (81%)
 Frame = +2

Query: 23  PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
           PKH     L+      PSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK+DG
Sbjct: 439 PKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDG 498

Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
           KVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K
Sbjct: 499 KVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAK 558

Query: 383 NVPYLVTHDGRTIRYPDPLIKV 448
            VPY+VTHD RTIRYPDP IKV
Sbjct: 559 GVPYIVTHDARTIRYPDPNIKV 580



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAP 66
           H+KRLNAPK WMLDKL GV+AP
Sbjct: 432 HMKRLNAPKHWMLDKLSGVFAP 453


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +2

Query: 137 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 304
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 124 EES--SEVCFDRKRSPENCE 177
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 201 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 85
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 48  WRCVCTEYRQPVPTSCASACP 110
           +RC+C +  +P  T C SA P
Sbjct: 224 YRCLCEDCGKPYSTDCGSAAP 244


>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
          Length = 445

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 158 EVLKIVKQRLIKVDGKVRTDP-TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 334
           + L+  K + ++V    RT P   P GF+ V  +EK      +    +  F   +  P E
Sbjct: 375 QFLRNDKWKTVEVPRATRTFPEARPPGFLSVSPMEKAASRISITQSERSAFRAPQQKPRE 434

Query: 335 AKYKL 349
           A+ +L
Sbjct: 435 AQLRL 439


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 311 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 412
           I  +TP+    K C+V R++TGP    +++  +G
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEG 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,046
Number of Sequences: 59808
Number of extensions: 313169
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)