Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0928
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 177 2e-45
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 0.89
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 27 4.8
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 27 4.8
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 27 4.8
Z81521-3|CAB04225.1| 353|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL117200-3|CAB55048.1| 257|Caenorhabditis elegans Hypothetical ... 27 8.3
AF045640-8|AAC02571.1| 394|Caenorhabditis elegans Hypothetical ... 27 8.3
AC006795-7|AAF59497.2| 199|Caenorhabditis elegans Hypothetical ... 27 8.3
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 177 bits (432), Expect = 2e-45
Identities = 85/142 (59%), Positives = 100/142 (70%)
Frame = +2
Query: 23 PKHGCWTNLAVCMHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 202
P H L P+ GPHKLRE LPL +FLRNRLKYAL E KI+ QR+++VDG
Sbjct: 14 PSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDG 73
Query: 203 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 382
KVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K
Sbjct: 74 KVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNK 133
Query: 383 NVPYLVTHDGRTIRYPDPLIKV 448
VP L T DGRTIRYPDP +KV
Sbjct: 134 GVPVLTTTDGRTIRYPDPHVKV 155
Score = 40.7 bits (91), Expect = 5e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYA 63
HLKRL AP WMLDKLGGV+A
Sbjct: 7 HLKRLAAPSHWMLDKLGGVFA 27
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 0.89
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 299 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 430
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 247 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 110
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 247 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 110
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 417 VRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 292
V P C Y PVA + H Y A + ++R N P T
Sbjct: 880 VNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>Z81521-3|CAB04225.1| 353|Caenorhabditis elegans Hypothetical
protein F32A11.3 protein.
Length = 353
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 73 VNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTP 186
V + P+VA + + +E S CF RK+ E E P
Sbjct: 147 VQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQEEEVP 184
>AL117200-3|CAB55048.1| 257|Caenorhabditis elegans Hypothetical
protein Y50E8A.5 protein.
Length = 257
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 65 RVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMD 244
R GP + C N +KY L N+ IV V+ K++ D AG+
Sbjct: 77 RHAENGPVTVTRCQRGETQNMNWVKYGLPVNQGDSIVSDDKCLVENKLKKDGDSCAGYCM 136
Query: 245 VVSIEKTNE 271
++I +T++
Sbjct: 137 TINITRTDD 145
>AF045640-8|AAC02571.1| 394|Caenorhabditis elegans Hypothetical
protein C11D2.2 protein.
Length = 394
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 144 AYFRRFLRKITRGKHSRNLWGPVDGTRCIHTAKF 43
A+F F + R +HS L GPV R +H++ F
Sbjct: 12 AHFSSFCMHLVRKEHSTCLMGPVVSNR-LHSSSF 44
>AC006795-7|AAF59497.2| 199|Caenorhabditis elegans Hypothetical
protein Y50D4B.1 protein.
Length = 199
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 192 FMRRCFTIFRTSFPVKAYFRRFLRKITRGKH 100
FMRRC T F +PV A +R +I R K+
Sbjct: 155 FMRRCLTRFPVHYPVPA--KRIPMEINRQKN 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,180
Number of Sequences: 27780
Number of extensions: 231055
Number of successful extensions: 690
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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