Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0928
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.054
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.054
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 337 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 221
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 379 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 260
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 131 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 232
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 19/83 (22%), Positives = 35/83 (42%)
 Frame = +2

Query: 59  MHRVPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 238
           M+R  S         +  V +L +  +   T +++    + R+ ++   VRT    P GF
Sbjct: 703 MNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRTASQIPQGF 762

Query: 239 MDVVSIEKTNELFRLIYDVKGRF 307
            D+V  +K  E   L   +  R+
Sbjct: 763 KDLVQ-KKCEERGILFMPIPNRY 784


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 431 LGSGWCGHHALPSTEHS*VRSPH 363
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 173 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 292
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 296 KGRFTIHRITPEEAKYKLCKVKRVATGPKNV 388
           K +  IHR  P ++     +VKR    P++V
Sbjct: 130 KIKLEIHRDLPGKSTTTTAEVKRDTINPEDV 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,106
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)