Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0927
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 34 0.020
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 29 0.58
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.3
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.1
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 4.1
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 5.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.2
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 7.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 33.9 bits (74), Expect = 0.020
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Frame = +1
Query: 304 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 483
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 484 AKY-TASDAYASTTLISAVV-RNTTTFKSSITERAEKCLTXLESEMSD 621
++Y + YA T S + N T FK++ + + L + SD
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHAKQISASD 231
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -2
Query: 556 TWWYCGP--RH*SELSRHKHRWRYTSQSD 476
T+WY P RH E + H W Y+S D
Sbjct: 44 TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -1
Query: 572 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 393
++ LN+ V + +++++E A + I PG +E+ ASG + T+ +
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTC 139
Query: 392 VSVFVD 375
++ VD
Sbjct: 140 IAYVVD 145
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 351 CSAGRVCEINEHGDAMCNCIKDC 419
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 352 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 522
A+ VSA + TP V+++ + + TS + I+ T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = -1
Query: 383 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 204
++ F + + V+ RV+ VD + + + + + + L +SLL+ A + +
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413
Query: 203 VFSLRDVPAAELLRRWTFSS 144
++S D A E L ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 257 FCLMVSLLVQALRHSVLDVFSLRD 186
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 367 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRN 546
S S+++ + T+ + P+ + TS+ G + TASD AS +IS+ N
Sbjct: 53 STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110
Query: 547 T 549
+
Sbjct: 111 S 111
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 400 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVR 543
V + +P + ++W S +P R Y STT ++ VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 588 FLGTFGNTRFERGGIADHGTDQSCRGISIAGGILRNP 478
FLG FG F H + GI++ G RNP
Sbjct: 713 FLGAFGMVGFPSFHTLKHKAELVYHGINVFGNESRNP 749
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 431 CLVGTVLDAVTHGVSVFVDFADT-SC 357
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.2
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +1
Query: 262 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 441
P T +RS T ++ ++T+ Q S + N+ TP +T+S +V TP
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395
Query: 442 AWCAQTSTKPGNRIAKYTASDAYASTTLI--SAVVRNTTTFKSS 567
TS+ N T+S S+T I S+++ ++T SS
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSS 435
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 262 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTET 393
P+ +TF+ +L R+ K +W L S+ + V K+T ET
Sbjct: 295 PQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKATLLET 336
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.5
Identities = 29/140 (20%), Positives = 58/140 (41%)
Frame = +1
Query: 199 NTSSTECLRAWTRSDTMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKS 378
+TSS+ +W + + T ST S+ + ST T ST+ S+ +
Sbjct: 609 STSSSSTQVSWNSTTPITGTSTSKVTSST-SIPLTSTNRTSTTFT---SSTSISTSSSST 664
Query: 379 TNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNTTTF 558
+ T + S + + T + + ST P T + ++ +++ +S++ N+T
Sbjct: 665 ATSSTSFASESSSFYSNVTTSS--STVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEV 722
Query: 559 KSSITERAEKCLTXLESEMS 618
K++ T + T S S
Sbjct: 723 KTASTSSGTEIKTASTSSGS 742
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,459
Number of Sequences: 5004
Number of extensions: 45605
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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