Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0927
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47600.1 68416.m05182 myb family transcription factor (MYB94)...    28   4.7  
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   6.2  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   6.2  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    27   8.2  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    27   8.2  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    27   8.2  
At2g32850.2 68415.m04025 protein kinase family protein contains ...    27   8.2  
At2g32850.1 68415.m04024 protein kinase family protein contains ...    27   8.2  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   8.2  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   8.2  

>At3g47600.1 68416.m05182 myb family transcription factor (MYB94)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB94) GI:3941527
          Length = 333

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 490 YTASDAYASTTLISAVVRNTTTFKSSI-TERAEKCLTXLESEMSDFPR 630
           Y  S + +STT  +   RNT  + S +    AE     L++ M D P+
Sbjct: 193 YGPSSSSSSTTTTTTTTRNTNPYPSGVYASSAENIARLLQNFMKDTPK 240


>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -1

Query: 572 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 393
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 392 VSVFVDFADTSCAAVDFQARVFH 324
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -1

Query: 572 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 393
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 392 VSVFVDFADTSCAAVDFQARVFH 324
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 555 RGGIADHGTDQSCRGISIAGGILR 484
           RG  ADHG + S  G+S+ GG  R
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQR 91


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 555 RGGIADHGTDQSCRGISIAGGILR 484
           RG  ADHG + S  G+S+ GG  R
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQR 91


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 445 WCAQTSTKPGNRIAKYTASDAYASTTL 525
           W  QT  KP + I  YT  D Y S+ L
Sbjct: 16  WIPQTPMKPFSPICPYTVEDQYHSSQL 42


>At2g32850.2 68415.m04025 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 670

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/102 (22%), Positives = 42/102 (41%)
 Frame = +1

Query: 343 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 522
           +ST   D S+KS    +P        P R  P    +   +  G  +  + A+  +A T+
Sbjct: 314 QSTGVHDGSSKSATKPSPA-------PRRSPPPPPPSSGESDSGGPLGAFWATQ-HAKTS 365

Query: 523 LISAVVRNTTTFKSSITERAEKCLTXLESEMSDFPRPMRGLA 648
           ++S   +N   F    +  ++     ++S     P P+RG A
Sbjct: 366 VVSEDNKNMPKFDEPNSNTSKSERVRVDSHQPKKPSPVRGEA 407


>At2g32850.1 68415.m04024 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 650

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/102 (22%), Positives = 42/102 (41%)
 Frame = +1

Query: 343 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 522
           +ST   D S+KS    +P        P R  P    +   +  G  +  + A+  +A T+
Sbjct: 314 QSTGVHDGSSKSATKPSPA-------PRRSPPPPPPSSGESDSGGPLGAFWATQ-HAKTS 365

Query: 523 LISAVVRNTTTFKSSITERAEKCLTXLESEMSDFPRPMRGLA 648
           ++S   +N   F    +  ++     ++S     P P+RG A
Sbjct: 366 VVSEDNKNMPKFDEPNSNTSKSERVRVDSHQPKKPSPVRGEA 407


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 71  PRDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 184
           P    H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 88  MTAITRANARRPFILPFDDAFLCEAGGSR 2
           MT +   + R PF++PFD   L E   S+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,967
Number of Sequences: 28952
Number of extensions: 264937
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)