Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0926
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 29 0.44
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 26 2.3
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 26 2.3
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 26 3.1
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 4.1
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 5.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.1
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 7.1
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 24 9.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 24 9.4
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 28.7 bits (61), Expect = 0.44
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +1
Query: 7 AADTAGNLLSPTLHTNQQXRSLDSSPSLKILNRRPISSNYVANNKVNLLSSAAPMSDACS 186
A+DT L ++ +L SL R +S+ Y+ NN++N + A + CS
Sbjct: 391 ASDTVRGAAISVLSAFEEHTTLPIQQSL-----REMSATYILNNEINWIYQEALLYACCS 445
Query: 187 VYKASLNQELYFQYVE 234
V AS + Y Y++
Sbjct: 446 VDAAS--DDTYDDYLD 459
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -1
Query: 225 LEVQLLIQRCLVHAACVRHRCGRTEQIHFVVRYVVAGDRSSI 100
L++ L CL + C R+ +++++V+Y+ G R S+
Sbjct: 84 LQIHQLHLLCLTYHLCTRNTWCDDNRLNYLVKYIPPGIRVSL 125
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 2.3
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 121 NYVANNKVNLLSSAAPMSDACSVYKASLNQELYFQYVEYESNLPDLKEFTMCLWM 285
N +AN + NL + P+ + ++Y+ S ++E+Y Q + E ++P +T WM
Sbjct: 238 NLIANLRKNLPALHKPLLEFLAMYEPSSSEEIY-QKLANEVDVPHAALWT---WM 288
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +1
Query: 319 FSYAVDDNPKEISFWVSNTKEASYFSMAVHGQTFFRLNY 435
F + D++P+E+ W + + + YFS + + +TF ++++
Sbjct: 177 FLCSKDEDPEEVDAWKKSFENSPYFSES-YFETFGKMHH 214
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 4.1
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +1
Query: 94 ILNRRPISSNYVANNKVNLLSSAAPMSDACSVYKASLNQELYFQYVEYESNLPDLKEFT- 270
I++R S A K+N L + + D ++ L ++ES+ L EF+
Sbjct: 89 IISRPTFSIEQDAEKKINELQTFTNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148
Query: 271 MCLWMKFHNHSTDHPLFSYAVDDNPKEISFW 363
MC N STD FS D K ++ +
Sbjct: 149 MC-----ENLSTDEMRFSEIADGIRKGLTIF 174
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 133 NNKVNLLSSAAPMSDACSVYKASLNQELYFQYVEYESNLPDLKE 264
N+ N+ SAA + C+V + + L YV N+ +L+E
Sbjct: 147 NSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEELEE 190
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 7 AADTAGNLLSPTLHTNQQXRSLDSSPSLKILNRRPISSNYVANNKVNLLSSAAPMS 174
A ++ + +PT+ + S+ S S+ PISSN V ++ +++SS A S
Sbjct: 778 AFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSS-TSIISSIASSS 832
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 396 AEVAGFFGIGDPERYFFW 343
A+VAGFFG D E + W
Sbjct: 628 ADVAGFFGNPDAELFVRW 645
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 91 KILNRRPISSNYVANNKVN---LLSSAAPMSDACSVY 192
++LNRRP+SSN + L S++AP+ ++
Sbjct: 578 ELLNRRPMSSNMQTTDNTGLDPLRSASAPVDSTFDLF 614
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 393 EVAGFFGIGDPERYFFWVIINS 328
E + FGI DP Y W I NS
Sbjct: 113 EFSNHFGISDPLFYGQWHIFNS 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.128 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,802
Number of Sequences: 5004
Number of extensions: 32695
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -