Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0926
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    29   2.3  
10_08_0406 - 17688069-17690643,17691065-17691132                       28   3.0  
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594...    27   7.0  
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    27   7.0  
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459...    27   9.2  
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397...    27   9.2  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    27   9.2  

>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   RLAADTAGNLLSPTLHTNQQXRSLDSSPSLKILN-RRPISSNYVANN 138
           RLA+D+AGN+L      ++  +   SS SL+ ++ RR ++S+ ++ N
Sbjct: 529 RLASDSAGNILKSMDLADRDNKPSTSSASLRGMSPRRRLASDGISKN 575


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 360 ERYFFWVIINSI*EKWMISRMIMELHPQAHRKLLEVWQVALVFYVLEVQLL 208
           E + FW +   +   W I RM+   H  AHR  L  W   L F V+ V+ L
Sbjct: 548 ETHEFWTV--HVFSSWNIVRMVCTYHRAAHRPWLR-W---LCFLVIRVRFL 592


>06_01_0798 -
           5944815-5944888,5945084-5945243,5945319-5945356,
           5945438-5945513,5946114-5946218,5947486-5947986,
           5948638-5948710,5949550-5949593,5949938-5950174
          Length = 435

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 283 MKFHNHSTDHPLFSYAVDDNPKEISFWVSNTKEASYF 393
           + F N    +P +   +D+ P E+S+W+   + A  F
Sbjct: 243 VNFFNDGDTYPDWPNDLDEKPMEVSWWMDAVESAKAF 279


>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 79  SPSLKILN-RRPISSNYVANNKVNLLSSAA 165
           +P L++L   +  SSNY+  N VN LSSA+
Sbjct: 583 APVLEVLQFEKSSSSNYITKNLVNGLSSAS 612


>12_02_0661 +
           21644328-21644517,21644697-21644875,21644899-21645922,
           21647108-21647262
          Length = 515

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 381 FFGIGDPERYFFWV 340
           F+G  DPE YF WV
Sbjct: 11  FYGSADPEEYFGWV 24


>03_01_0530 +
           3971990-3972331,3972415-3972489,3972608-3972661,
           3972747-3972825,3972927-3973054,3973178-3973261,
           3973344-3973427,3973518-3973669,3973810-3973960,
           3974675-3974746,3975708-3975749
          Length = 420

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 293 WNFIHKHIVNSLRSGR 246
           WN +  HI+N  RSGR
Sbjct: 154 WNHVVSHIINEYRSGR 169


>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 339  IINSI*EKWMISRMIMELHPQAHRKLL 259
            II S  + W + R++++LH   HR LL
Sbjct: 1288 IIRSCGKLWNLDRILIKLHRSGHRVLL 1314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,936,533
Number of Sequences: 37544
Number of extensions: 205254
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)