BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0926 (450 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 2.3 10_08_0406 - 17688069-17690643,17691065-17691132 28 3.0 06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 27 7.0 03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 27 7.0 12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 27 9.2 03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397... 27 9.2 02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 9.2 >02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996, 33775322-33775411,33775971-33776078,33776304-33776351 Length = 1369 Score = 28.7 bits (61), Expect = 2.3 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Frame = +1 Query: 1 RLAADTAGNLLSPTLHTNQQXRSLDSSPSLKILN-RRPISSNYVANN 138 RLA+D+AGN+L ++ + SS SL+ ++ RR ++S+ ++ N Sbjct: 529 RLASDSAGNILKSMDLADRDNKPSTSSASLRGMSPRRRLASDGISKN 575 >10_08_0406 - 17688069-17690643,17691065-17691132 Length = 880 Score = 28.3 bits (60), Expect = 3.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -1 Query: 360 ERYFFWVIINSI*EKWMISRMIMELHPQAHRKLLEVWQVALVFYVLEVQLL 208 E + FW + + W I RM+ H AHR L W L F V+ V+ L Sbjct: 548 ETHEFWTV--HVFSSWNIVRMVCTYHRAAHRPWLR-W---LCFLVIRVRFL 592 >06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356, 5945438-5945513,5946114-5946218,5947486-5947986, 5948638-5948710,5949550-5949593,5949938-5950174 Length = 435 Score = 27.1 bits (57), Expect = 7.0 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = +1 Query: 283 MKFHNHSTDHPLFSYAVDDNPKEISFWVSNTKEASYF 393 + F N +P + +D+ P E+S+W+ + A F Sbjct: 243 VNFFNDGDTYPDWPNDLDEKPMEVSWWMDAVESAKAF 279 >03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339, 2887152-2887207,2888006-2888079,2889511-2889798, 2890043-2890120,2890359-2890882,2891315-2891438, 2891619-2891767,2891983-2892137,2892477-2892682, 2892768-2892901,2892983-2893284,2893514-2893617, 2893858-2893928 Length = 983 Score = 27.1 bits (57), Expect = 7.0 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +1 Query: 79 SPSLKILN-RRPISSNYVANNKVNLLSSAA 165 +P L++L + SSNY+ N VN LSSA+ Sbjct: 583 APVLEVLQFEKSSSSNYITKNLVNGLSSAS 612 >12_02_0661 + 21644328-21644517,21644697-21644875,21644899-21645922, 21647108-21647262 Length = 515 Score = 26.6 bits (56), Expect = 9.2 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -1 Query: 381 FFGIGDPERYFFWV 340 F+G DPE YF WV Sbjct: 11 FYGSADPEEYFGWV 24 >03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661, 3972747-3972825,3972927-3973054,3973178-3973261, 3973344-3973427,3973518-3973669,3973810-3973960, 3974675-3974746,3975708-3975749 Length = 420 Score = 26.6 bits (56), Expect = 9.2 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 293 WNFIHKHIVNSLRSGR 246 WN + HI+N RSGR Sbjct: 154 WNHVVSHIINEYRSGR 169 >02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889, 752025-753905,754093-754296,754807-754899,755036-755122, 755241-755328,755533-755645,755943-757259,757398-758672, 759166-759273 Length = 2233 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -1 Query: 339 IINSI*EKWMISRMIMELHPQAHRKLL 259 II S + W + R++++LH HR LL Sbjct: 1288 IIRSCGKLWNLDRILIKLHRSGHRVLL 1314 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.317 0.128 0.380 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,936,533 Number of Sequences: 37544 Number of extensions: 205254 Number of successful extensions: 657 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 641 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 657 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 871620292 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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