Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0926
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97403-5|AAO21397.1| 268|Caenorhabditis elegans Hypothetical pr... 31 0.51
U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical pr... 31 0.51
AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical... 30 0.89
AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical ... 28 3.6
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 27 4.8
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 27 4.8
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 27 4.8
AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm rece... 27 4.8
AC024817-6|AAY86298.2| 488|Caenorhabditis elegans Hypothetical ... 27 6.3
AC006769-6|AAF60582.1| 274|Caenorhabditis elegans Hypothetical ... 27 6.3
Z68314-6|CAA92657.2| 446|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 27 8.3
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 27 8.3
>U97403-5|AAO21397.1| 268|Caenorhabditis elegans Hypothetical
protein T10E9.7b protein.
Length = 268
Score = 30.7 bits (66), Expect = 0.51
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 163 APMSDACSVYKAS--LNQELYFQYVEYESNLPDLKEFTMCLWMKFHNHSTDHPLFSY 327
AP+ A V+K + +E+Y Y + +N PDL+ + H D+PL Y
Sbjct: 148 APIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGY 204
>U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical
protein T10E9.7a protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.51
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 163 APMSDACSVYKAS--LNQELYFQYVEYESNLPDLKEFTMCLWMKFHNHSTDHPLFSY 327
AP+ A V+K + +E+Y Y + +N PDL+ + H D+PL Y
Sbjct: 325 APIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGY 381
>AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical
protein C18E3.9a protein.
Length = 298
Score = 29.9 bits (64), Expect = 0.89
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 28 LLSPTLHTNQQXRSLDSSPSLKILNRRPISSN 123
++SPT T Q+ S +SSP+LK+ P SSN
Sbjct: 194 IISPTEKTLQKSTSSNSSPTLKLFVTVPSSSN 225
>AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.14 protein.
Length = 468
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 159 CRTDV*RMQRVQGIAESGVVLPVRRIREQPARPQGVYD 272
CR V + +R + A + V ++++RE+P +P D
Sbjct: 59 CRAVVSKEKRTKNFALTNAVTMIQKLREKPKKPANAVD 96
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 281 HKHIVNSLRSGRLLSYSTYWKYNS*FSDALYT--LHASDIGAA-ELSRFTLLFAT*LLEI 111
H+ I ++R+G + Y+K A+YT ++ D A E R + FAT ++
Sbjct: 134 HRWITRAVRNGNMKEIKDYYKSKKCQKSAIYTSFAYSFDTSACDEALRQDIKFATEFFKM 193
Query: 110 GLRLRIFNDGLESKE 66
++ + N KE
Sbjct: 194 NNKMEVDNSYHPGKE 208
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 281 HKHIVNSLRSGRLLSYSTYWKYNS*FSDALYT--LHASDIGAA-ELSRFTLLFAT*LLEI 111
H+ I ++R+G + Y+K A+YT ++ D A E R + FAT ++
Sbjct: 134 HRWITRAVRNGNMKEIKDYYKSKKCQKSAIYTSFAYSFDTSACDEALRQDIKFATEFFKM 193
Query: 110 GLRLRIFNDGLESKE 66
++ + N KE
Sbjct: 194 NNKMEVDNSYHPGKE 208
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 281 HKHIVNSLRSGRLLSYSTYWKYNS*FSDALYT--LHASDIGAA-ELSRFTLLFAT*LLEI 111
H+ I ++R+G + Y+K A+YT ++ D A E R + FAT ++
Sbjct: 134 HRWITRAVRNGNMKEIKDYYKSKKCQKSAIYTSFAYSFDTSACDEALRQDIKFATEFFKM 193
Query: 110 GLRLRIFNDGLESKE 66
++ + N KE
Sbjct: 194 NNKMEVDNSYHPGKE 208
>AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm
receptor protein 87 protein.
Length = 330
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 147 IHFVVRYVVAGDRSSIENLQRW 82
+HF+ RY V D +EN + W
Sbjct: 110 LHFIYRYFVVCDAGKLENFKGW 131
>AC024817-6|AAY86298.2| 488|Caenorhabditis elegans Hypothetical
protein Y54G2A.42 protein.
Length = 488
Score = 27.1 bits (57), Expect = 6.3
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 142 VNLLSSAAPMSDACSVYKASLNQELYFQYVE 234
+++++S P S+ Y S++ E+Y++Y+E
Sbjct: 269 IDVVTSKRPASEQLVDYHKSMDSEMYYKYME 299
>AC006769-6|AAF60582.1| 274|Caenorhabditis elegans Hypothetical
protein Y45G12C.6 protein.
Length = 274
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 258 EVWQVALVFYVLEVQLLIQRCLV 190
EV Q++ VFY L +Q LI C++
Sbjct: 177 EVGQISSVFYTLIIQTLIPMCIL 199
>Z68314-6|CAA92657.2| 446|Caenorhabditis elegans Hypothetical
protein F07H5.9a protein.
Length = 446
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 310 HPLFSYAVDDNPKEISFWVSNTKEASYFSMAVHGQT 417
+PL+S AV + +W + T A YF + H Q+
Sbjct: 349 YPLYSAAVS-----VEYWRNTTDNADYFKLVYHKQS 379
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 26.6 bits (56), Expect = 8.3
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +1
Query: 34 SPTLHTNQQXRSLDSSPSLKILNRRPISSN-----YVANNKVNLLSSAAPMSDACSVYKA 198
SPT N S S P ++IL + P+S+ + + + + P+S V +A
Sbjct: 295 SPTSSQNVSDSSTKSRPEIQILTKNPVSAQNGSDLHGTSTQSRPEAQKTPVSTRKFVPQA 354
Query: 199 SLNQELYFQYVEYESNLPDL 258
SL +++ +Y N PD+
Sbjct: 355 SLPTKIW-KYPVSTLNRPDI 373
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 26.6 bits (56), Expect = 8.3
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +1
Query: 34 SPTLHTNQQXRSLDSSPSLKILNRRPISSN-----YVANNKVNLLSSAAPMSDACSVYKA 198
SPT N S S P ++IL + P+S+ + + + + P+S V +A
Sbjct: 295 SPTSSQNVSDSSTKSRPEIQILTKNPVSAQNGSDLHGTSTQSRPEAQKTPVSTRKFVPQA 354
Query: 199 SLNQELYFQYVEYESNLPDL 258
SL +++ +Y N PD+
Sbjct: 355 SLPTKIW-KYPVSTLNRPDI 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.128 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,235,084
Number of Sequences: 27780
Number of extensions: 179121
Number of successful extensions: 605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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