Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0926
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    25   0.29 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              24   0.88 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.88 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   1.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 52  NQQXRSLDSSPSLKILNRRPISSNYVANNKVN 147
           N+  R     P + I N  P+S+NY  NN  N
Sbjct: 69  NRTERERSKEPKI-ISNNNPLSNNYNYNNNYN 99


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 133 NNKVNLLSSAAPMSDACSVYKASLNQELYFQY 228
           N    LL+  +P+SD  ++ K S   E +F+Y
Sbjct: 95  NEADQLLAECSPISDPNALIKISKILECFFKY 126


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 100 NRRPISSNYVANN-KVNLLSSAAPMSDACSV 189
           N RPISS+ +ANN  + LL       D  SV
Sbjct: 58  NVRPISSHQIANNVTMQLLPKLMEFDDWTSV 88


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 13  DTAGNLLSPTLHTN 54
           D  GN+LSP++H N
Sbjct: 359 DGNGNILSPSIHDN 372


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 364 VSNTKEASYFSMAV 405
           VSNTK+A  +S+A+
Sbjct: 2   VSNTKQAFIYSLAL 15


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 301 STDHPLFSYAVDDNPKEISFWVSNTKEASYFSMAVHGQTFFR 426
           +TDHP  +Y +  + K I+    N     Y     +   FFR
Sbjct: 207 TTDHPSVAYLLVGSLKGIARQFYNDDANVYILPDPYNTKFFR 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,783
Number of Sequences: 438
Number of extensions: 2298
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)