Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0926
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate syntha...    30   0.63 
At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putat...    28   3.4  
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai...    28   3.4  
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai...    28   3.4  
At5g51200.1 68418.m06349 expressed protein                             27   5.9  
At1g11270.2 68414.m01292 F-box family protein contains F-box dom...    27   5.9  
At1g11270.1 68414.m01291 F-box family protein contains F-box dom...    27   5.9  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    27   7.7  
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    27   7.7  

>At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 795

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 337 DNPKEISFWVSNTKEASYFSMAVHGQTFFRLNYXL 441
           D+PK++S  + + K  +YFS+A+ GQT  +  Y L
Sbjct: 743 DSPKKVSSTIVDLKGENYFSVAI-GQTHTKARYFL 776


>At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putative
           similar to ATP-binding-cassette transporter (ABC1)
           described in PMID:11156608
          Length = 470

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 192 VHAACVRHRCGRTEQIHFVVRYVVAGDRSSIENLQRWTGV 73
           +HAA V   C    +I +  R + AGDRS I     WT V
Sbjct: 312 LHAAVVELYCAEGAEIKYSTRGLCAGDRSKIS----WTQV 347


>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 460

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 49  TNQQXRSLDSSPSLKILNRRPISSNYVANNKVNLLSSAA 165
           + Q  RSLD+ P +     RP+SS+  A     ++SS++
Sbjct: 114 SEQPPRSLDTRPRMAEPRDRPLSSSRTARGSSQMISSSS 152


>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 456

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 49  TNQQXRSLDSSPSLKILNRRPISSNYVANNKVNLLSSAA 165
           + Q  RSLD+ P +     RP+SS+  A     ++SS++
Sbjct: 114 SEQPPRSLDTRPRMAEPRDRPLSSSRTARGSSQMISSSS 152


>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +1

Query: 88   LKILNRRPISSNYVANNKVNLLSSAAPMSDACSVYKASLNQELYFQYVEYESNLPDLKEF 267
            L+IL  R   ++      V+ L   + + D       S++  +Y+ Y E    L DL  F
Sbjct: 1061 LEILQFRSPDASMQLPQIVSSLKYDSLVEDILGNRDTSVSGSIYY-YSERGDRLIDLSSF 1119

Query: 268  TMCLWMKFHN 297
            +  LW K H+
Sbjct: 1120 SNKLWQKLHS 1129


>At1g11270.2 68414.m01292 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 312

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = +1

Query: 217 YFQYVEYESNLPDLKEFTMCLWMKFHNHSTD--HPLFSYAVDDNPKEIS-----FWVSNT 375
           Y Q   Y S+   L + T C    F N++    HP   Y ++D    +       W++  
Sbjct: 189 YKQVWLYNSSEFRLDDVTTCEVFDFSNNAWRYVHPASPYRINDYQDPVYSDGSVHWLTEG 248

Query: 376 KEASYFSMAVHGQTF 420
           KE+   S  +H +TF
Sbjct: 249 KESKILSFHLHTETF 263


>At1g11270.1 68414.m01291 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 312

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = +1

Query: 217 YFQYVEYESNLPDLKEFTMCLWMKFHNHSTD--HPLFSYAVDDNPKEIS-----FWVSNT 375
           Y Q   Y S+   L + T C    F N++    HP   Y ++D    +       W++  
Sbjct: 189 YKQVWLYNSSEFRLDDVTTCEVFDFSNNAWRYVHPASPYRINDYQDPVYSDGSVHWLTEG 248

Query: 376 KEASYFSMAVHGQTF 420
           KE+   S  +H +TF
Sbjct: 249 KESKILSFHLHTETF 263


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/103 (16%), Positives = 40/103 (38%)
 Frame = +1

Query: 49  TNQQXRSLDSSPSLKILNRRPISSNYVANNKVNLLSSAAPMSDACSVYKASLNQELYFQY 228
           T  +  +      +K+L  +         +  +L+ +     D    + A+ NQ +    
Sbjct: 603 TKMKTENATKDDEIKLLREKMSLLQKGLGDSNDLMENQLSNDDYSIGFMAAENQNMSLVE 662

Query: 229 VEYESNLPDLKEFTMCLWMKFHNHSTDHPLFSYAVDDNPKEIS 357
            ++  N+ +L E  +  W++F         +  +++D   EIS
Sbjct: 663 EQFRLNIDELLEENLDFWLRFSTAFGQIQSYDTSIEDLQAEIS 705


>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 261 LEVWQVALVFYVLEVQLLIQRCLVHAACVRHRCGRTEQIHFV 136
           L  WQ+ L+  +  + +L+    +   C+R R GR E+  +V
Sbjct: 765 LSTWQIVLIAVLSSLLVLVVVLALVFICLRRRKGRPEKDAYV 806


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,722,649
Number of Sequences: 28952
Number of extensions: 165682
Number of successful extensions: 512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)