Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0923
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    31   0.14 
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   2.3  
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    26   5.4  
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    26   5.4  
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    26   5.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.2  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   7.2  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   9.5  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   9.5  

>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 437 PVTILIRFSDCVFENRHYLKKKRKFILTTVFIYRVP-TSGRT-IYGILGINV 586
           P+T  +      F   +YL K+RK    + + + +P TS R+ +  I+GINV
Sbjct: 37  PITFAVGVGSATFYTANYLDKRRKNYPKSSYGFPIPQTSSRSLVLSIIGINV 88


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
 Frame = +2

Query: 275  VEFTNSVKNLPAISCV------FLKPLNIYILEMFFKVHK*MNVLLFAQGKYVIIFLCKT 436
            + F   +KNL  I  +      FL+ L I +L++ + V       LF+    VIIF C  
Sbjct: 975  IPFNCELKNLSIIDIIRNNWWLFLQGLAIDLLKLPWAVFHIFLRYLFSHSFLVIIFACSV 1034

Query: 437  PVTILIRFSDCVFENRHYLKKKRKFILTTVF--IYRVPTSGRTIY 565
             + + + F  C F  +++ +++    +  VF     + TS R +Y
Sbjct: 1035 ILNLSLMF--C-FGAKYWDERQNNKFVGQVFDEFKNIETSARYVY 1076


>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 500 KRKFILTTVFIYRVPTSGRTIYGILG 577
           KRK + +   +Y +   GRTIYG  G
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTIYGFGG 103


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 500 KRKFILTTVFIYRVPTSGRTIYGILG 577
           KRK + +   +Y +   GRTIYG  G
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTIYGFGG 103


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 500 KRKFILTTVFIYRVPTSGRTIYGILG 577
           KRK + +   +Y +   GRTIYG  G
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTIYGFGG 103


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 149  LFKPLNSYFKGISRNHITNCKTS 217
            L  PLN  F+ ++R+HI  C  S
Sbjct: 2185 LLLPLNKCFQKVARDHIVACMQS 2207


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 452 IRFSDCVFENRHYLKKKRKFILTTVFI 532
           +RFS      + YL+K+ +F+ TT F+
Sbjct: 138 LRFSQSRIHQKWYLRKQIRFLPTTSFV 164


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 95  VSKAAAFFYKPISDFFIKLFKPLNSYFKGISRNHITNCKTSR 220
           +SK        IS+FF+K   P     K  S   +TN K  R
Sbjct: 351 ISKRKGISKTDISNFFMKSIPPSKRPTKSTSLIDVTNVKVQR 392


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 446 ILIRFSDCVFENRHYLKKKRKFILTTVFIYRVPTSGRTIYGILGINVCSS 595
           I+   S+ +FE    LKKK      TV I        T Y +L  NV SS
Sbjct: 126 IIPHISESIFEEIDKLKKKSPNTTITVSISLAEIIEETPYDLLQPNVNSS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,405
Number of Sequences: 5004
Number of extensions: 51511
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)