Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0923
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50424| Best HMM Match : DUF581 (HMM E-Value=5.1)                    30   1.9  
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   28   7.6  

>SB_50424| Best HMM Match : DUF581 (HMM E-Value=5.1)
          Length = 496

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 199 NMIPANSFKVTVKRLKKFNKKIRNGFIEEGSSFADVRDWAIL----FPRQLKKKPVYNRL 32
           N    N    T++    ++ K  +G+I   S+FA  + WA+     FPR+ KK  +   L
Sbjct: 148 NPFVQNEADKTIENTINWDCKTGSGYISFSSNFAATQGWALADEYGFPRKTKKAALAQHL 207

Query: 31  TLXLAVLLAF 2
              + ++  F
Sbjct: 208 EKQVTIISDF 217


>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 481 STLFKKKTQIYFNDCIYLSSTNKWQNYLWYTRYK 582
           S L K  +Q+++ND  Y S   K  + +WY   K
Sbjct: 707 SVLGKATSQVWYNDSKYYSDLGKATSQVWYNDSK 740


>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 541  TNKWQNYLWYTRYKRVFVGTGKNS--RSXQGLPRI 639
            T KW +     RY+RVFV   K+S  R   GLP++
Sbjct: 911  TLKWIDAFLCERYQRVFVNGAKSSWTRVTSGLPQV 945


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,949,695
Number of Sequences: 59808
Number of extensions: 325627
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)