Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0923
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine rece...    31   0.94 
U64856-3|AAB04987.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    28   6.6  
U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein7 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -1

Query: 407 FLVQTKVRSFIYVL*KTFLV-YIYLVALKKHTRLPEDF*HC-L*ILLDSSKTGNILSFFF 234
           F V   +    YV+   ++V Y   V ++++TR      +  + I++ S+ T NILSFFF
Sbjct: 22  FPVYFALLPLFYVIPTIYIVNYTIFVFMEQYTRKKTCVVNPHIFIVVSSAHTVNILSFFF 81

Query: 233 DIMKN 219
           D M N
Sbjct: 82  DYMSN 86


>U64856-3|AAB04987.1|  392|Caenorhabditis elegans Hypothetical
           protein T25F10.4 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 496 KKTQIYFNDCIYLSSTNKWQNYLWYTRYKR 585
           K T   FN+ + L S+ +W+  LW   Y+R
Sbjct: 341 KFTMSTFNEVLNLHSSAEWRRKLWLNAYRR 370


>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 470 VFENRHYLKKKRKFILTTVFIYRVPTSGRTIYGILGINV 586
           +FENRH     R    TT F Y++  S R + GIL  +V
Sbjct: 132 LFENRH-----RHLAPTTDFTYKIHKSPRILLGILNFSV 165


>U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical
           protein F45E4.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 498 KNANLF*RLYLFIEYQQVAELFMVY*V*TCVRRNGKKFEKLXRSSENLG 644
           K  N +  L+ F+    V  LF+++   TC+ ++ +K EKL   S+ +G
Sbjct: 193 KWGNWYLNLFPFVLASFVIGLFIIFFCITCIYQDDRKQEKLMEISQVVG 241


>AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical
           protein Y38H6A.1 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 444 VTGVLHKKIMTYFPCANKSTFIYLCTLKNISSIYIFSGFKKTHEIAG--RFLTLFVNSTG 271
           +T     KI T F   N S   Y C +K    +   +G+K    I    RFL+ F+ S  
Sbjct: 149 ITKAYVNKICTKFVKQNLSAKQYACAIKYAPQVVTVTGYKCATVIDKFFRFLSFFIFSQI 208

Query: 270 LF 265
           LF
Sbjct: 209 LF 210


>AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical
           protein Y48A6B.1 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 375 LCTLKNISSIYIFS---GFKKTHEIAGRFLTLFVNSTGLFKNRKH 250
           L  L+N S+IY F     F + + +  R+L LFV   G+  N  H
Sbjct: 8   LFDLENNSTIYFFDQLIAFNQVYTVLHRYLCLFVCFFGVLLNSLH 52


>AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical
           protein H12C20.5 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +1

Query: 250 MFPVFEESSRIY----KQCQKSSGNLVCFFKA-TKYIYTRNVF 363
           MF VF  S  IY    ++ +K++ N++CFF+A +  I   NVF
Sbjct: 24  MFGVFCNSVIIYIFLKEKSEKTAFNVICFFRAISNVIILTNVF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,146
Number of Sequences: 27780
Number of extensions: 279753
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)