Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0923
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45310.1 68418.m05562 expressed protein                             31   0.50 
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f...    28   4.7  
At4g35890.1 68417.m05097 La domain-containing protein contains P...    28   6.2  
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ...    27   8.2  

>At5g45310.1 68418.m05562 expressed protein
          Length = 352

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +2

Query: 263 LKSPVEFTNSVKNLPAISCVFLKPLNIYIL 352
           LKS V+F ++VKN PA+  V L  LN +I+
Sbjct: 277 LKSVVQFFSTVKNKPALDAVALMSLNWFIV 306


>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
           factor family protein similar to to PRESSED FLOWER
           (GP:17907768) {Arabidopsis thaliana};
          Length = 268

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 417 MTYFPCANKSTFIYLCTLKNISSIYIFSGFKKTHEIAGRFLTLFVNSTGLFKNR-KHSLF 241
           M  +PC+N    +   +  N+S+ Y  +G   + +I   FL L  +S G   N    +LF
Sbjct: 108 MHQYPCSNNEIDLGFGSCSNLSANYFLNG-SSSSQIPSFFLGLSSSSGGCENNNGMENLF 166

Query: 240 LL*HHE 223
            +  HE
Sbjct: 167 KMYGHE 172


>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 432 LHKKIMTYFPCANKSTFIYLCTLKN---ISSIYIFSGFKKTHEI 310
           LHK+I  YF   N  T IYL    N      + + +GFKK  E+
Sbjct: 373 LHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAEL 416


>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
           similar to PIR:T05288 from [Arabidopsis thaliana]
          Length = 303

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 461 SDCVFENRHYLKKKRKFILTT 523
           S+C F +  + KKKRK  LTT
Sbjct: 183 SECYFSSEQHAKKKRKIHLTT 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,146,261
Number of Sequences: 28952
Number of extensions: 235231
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)