Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0922
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 31 1.3
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 29 3.9
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753... 29 3.9
12_01_0701 - 5968970-5969353 29 5.2
11_06_0530 + 24696399-24697592 28 6.9
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 28 6.9
07_01_0340 - 2452715-2452848,2453470-2453650 28 6.9
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 28 6.9
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 28 9.1
08_01_1016 - 10280918-10281171,10281319-10281460 28 9.1
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 538 RDQEPRRKFPLPGVDVEKSSTNGANVTLAPAILETGRALPLRGVRGTXALPT 693
RD+ PRR+ D +S +G+ T +PA+ ALP+ G T ALPT
Sbjct: 2 RDERPRRQ-----PDEWRSVHSGSGATESPALGSAAAALPIAGFAAT-ALPT 47
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 511 GKEFFRHVPRDQEPRRKFPLPGVDVEKSSTNGANVTLAPA 630
G+E H Q+P+ P G +VE++ ++ APA
Sbjct: 278 GREVVAHTTSAQQPQAMMPAQGAEVEQNGETKSSAQRAPA 317
>01_05_0335 +
21074117-21074241,21074299-21074929,21075359-21075399,
21078458-21078560,21078755-21079601,21079938-21080689,
21080712-21080970,21081011-21081354
Length = 1033
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 546 RATKKIPSPGSRC*KVEHEWRERDSRPGHSGNGPGATAARC---PGNG 680
R T + P S V ++ RP H G G G+ AAR PG+G
Sbjct: 338 RFTDRSVPPPSYAAVVRRSMERKNQRPVHGGGGQGSFAARANFHPGHG 385
>12_01_0701 - 5968970-5969353
Length = 127
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +3
Query: 618 SRPGHSGNGPGATAARCPGNGRSSDSVRPR*YDHRSVTRPGPTI 749
S P SG G GATAA +V PR HR+ TRP P +
Sbjct: 20 SPPAGSGGGEGATAA----------TVAPRIRRHRATTRPPPPL 53
>11_06_0530 + 24696399-24697592
Length = 397
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 403 ELRVPAHVPLGTRAELSCRWQLG--PADILYSVKWYKDGKEFFRHVPRD 543
ELR VP G +LS G PA++ + Y +G +F VPR+
Sbjct: 278 ELRPSGRVPAGATVDLSHNALSGRVPAELAPAAAVYLNGNKFAGQVPRE 326
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 461 GNSARPTSFIPSNGIKTERNSSDTCH 538
G RP SF+ SNG+ R++S +CH
Sbjct: 33 GTGTRPLSFVGSNGV-GGRSASGSCH 57
>07_01_0340 - 2452715-2452848,2453470-2453650
Length = 104
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 714 HISVVGHCRKSXRSPDTSQR*RPARFQNGRGESHVRAIR 598
H+S++ R+ SP T+ RP FQ R SH IR
Sbjct: 31 HLSMLERGRRPGGSPVTAIMARPPAFQRRRDGSHTTPIR 69
>04_03_0554 - 17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 556 RKFPLPGVDVEKSSTNG 606
R FPLPGVD+ +TNG
Sbjct: 1206 RSFPLPGVDMLHDTTNG 1222
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 485 FIPSNGIKTERNSSDTCHEIKSHEENSLSRESMLKSRAR 601
F+ +NG T N D C+ + H EN + E M + R
Sbjct: 414 FLQANGWPTGPNCEDLCNRLHYHLENDKTLERMRRVLVR 452
>08_01_1016 - 10280918-10281171,10281319-10281460
Length = 131
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 630 HSGNGPGATAARCPGNGRSSDSVRPR*YDHRSVTRPGP 743
H G GA AA G G S+S RPR + + T P P
Sbjct: 74 HKGGSAGAAAAAGAGGGGVSES-RPRNGKNGAATLPAP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,003,401
Number of Sequences: 37544
Number of extensions: 505346
Number of successful extensions: 1713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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