Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0922
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   31   1.3  
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               29   4.0  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_32161| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.00065)         28   9.3  
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  
SB_2797| Best HMM Match : YscO (HMM E-Value=2.8)                       28   9.3  

>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 255 PRHTHFTNQSINFSVHQHHGRFPVRAQLQDTAKSSLCNARFLRH 124
           PRHTH T   +N  V+ ++G  P+  ++   A+ ++      +H
Sbjct: 199 PRHTHITQALVNIQVNSNNGTLPLLCKIDTGAEGNVIPLSNYKH 242


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 522  LQTRATRSRATKKIPSPGSRC*KVEHEWRERDSRPG 629
            +Q+RAT SRA +  P P SR      E R   S PG
Sbjct: 909  VQSRATESRAEQPSPDPSSRVQSRADESRAEQSSPG 944


>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 246  THFTNQSINFSVHQHHGRFPVRAQLQDTAKSSLCNARFLRHSTAYVILTKHKFHGI 79
            T +  Q+   ++H  H     R  +QDT + +LC  R+      +     H  H I
Sbjct: 1329 TRYARQATGHAMHARHAMH-ARHAMQDTLQDTLCKTRYRTRYARHATRHYHAQHAI 1383


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +2

Query: 458  DGNSARPTSFIPSNGIKTERNSSDTCHEIKSHEENSLSRESMLKSRARMART*LSPRPFW 637
            +G SA P+      G K++  S       KS +    S     KSR +  +   SP P  
Sbjct: 1138 EGPSAAPSVAPSETGAKSDSKSEKGTKSAKSAKSKGASTPGSPKSRQKTVKKDRSPSPTS 1197

Query: 638  KRAG 649
            K+ G
Sbjct: 1198 KKGG 1201


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 404 SYGSRRMSHLAPELNFPVDGNSARPTSFIPSNGIKTERNSSDTCHEIKSHEENSLSRESM 583
           SY SR  S  +         +S+R  S  PS+G    RNSS +    +SH  +    +S+
Sbjct: 197 SYSSRSRSSSSSSSG---SSHSSRSQSHTPSSG-SGSRNSSRSASRSQSHSVSRSRSKSL 252

Query: 584 LKSRAR 601
            +SR+R
Sbjct: 253 SQSRSR 258


>SB_32161| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.00065)
          Length = 496

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 715 SYQRGRTLSEERPFPGH--LAAVAPGPFPEWPGRESRSRHSCSTFQH 581
           S  + RTL   +PFP H  +  V  G +   PG E  +R   S+  H
Sbjct: 297 SLSQMRTLCRIKPFPSHVEVTVVTSGAYSTKPGSEELNRVWSSSQDH 343


>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 662 RSGSARPVSRMAGARVTFAPFVLDFSTSTPGRGNFLR 552
           RS   +P S  A  +VT  P V+DF+T+ P  G  +R
Sbjct: 66  RSQLLKPKSNRAKRKVT--PLVIDFNTNLPDIGQIVR 100


>SB_2797| Best HMM Match : YscO (HMM E-Value=2.8)
          Length = 246

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 160 SRVLKLCPHGETAVMLMN*KVYGL 231
           +R+L+LC   ET +  +N KVYGL
Sbjct: 72  NRLLELCNDHETEISSLNSKVYGL 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,997,067
Number of Sequences: 59808
Number of extensions: 562327
Number of successful extensions: 1589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)