Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0922
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82069-1|CAB04902.1| 667|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78012-9|CAB01419.1| 185|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z75954-9|CAB00110.1| 185|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 28 6.2
U80441-7|AAB37655.1| 252|Caenorhabditis elegans Hypothetical pr... 28 8.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 8.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 8.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 8.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 8.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 8.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 8.1
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 28 8.1
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 28 8.1
>Z82069-1|CAB04902.1| 667|Caenorhabditis elegans Hypothetical
protein W04A8.1 protein.
Length = 667
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 57 ERNLSVVKFHGICVLLISHKQCCDVEIVR 143
ER L VV HG LL+ CCDV IVR
Sbjct: 522 ERTLCVVSRHGKRTLLVLRAICCDVPIVR 550
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 394 ELLELRVPAHVPLGTRAELSCRWQLGPADILYSVKWYKDGKEFFRHVPRDQEPRRKFPLP 573
E+ ++ VPA V + + A + + +L A +V + DG+ ++ PR E + K P P
Sbjct: 816 EISKIPVPASVRVPSAATRNIQEELDEAVASGAVSFTDDGQAVLKNAPRQTETQLKAPPP 875
>Z78012-9|CAB01419.1| 185|Caenorhabditis elegans Hypothetical
protein F58H1.7a protein.
Length = 185
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 348 TRCDASIERLRRDKPRTIRATGPGACPTWHP 440
T C SI + K R A P CPTWHP
Sbjct: 13 TACSFSIRDIINGK-RGADAAIPAPCPTWHP 42
>Z75954-9|CAB00110.1| 185|Caenorhabditis elegans Hypothetical
protein F58H1.7a protein.
Length = 185
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 348 TRCDASIERLRRDKPRTIRATGPGACPTWHP 440
T C SI + K R A P CPTWHP
Sbjct: 13 TACSFSIRDIINGK-RGADAAIPAPCPTWHP 42
>Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical
protein C27H6.3 protein.
Length = 660
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 336 KLFVHQCHIS*GSASMHLFSKLVSLSPPRHTHFTN 232
++ +C I G++ M F+KL+ ++PP F N
Sbjct: 375 QIMSRKCTIRYGTSIMPSFAKLIDVAPPTEAEFNN 409
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 500 GIKTER-NSSDTCHEIKSHEENSLSRESMLK 589
G+ T R NSSD+ EI+ +EEN S +L+
Sbjct: 499 GVVTGRGNSSDSIDEIRKYEENFFSTSQLLR 529
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 612 RDSRPGHSGN--GPGATAARCPGNGRSSDSVRPR 707
+D +PG GN PG+ AA CP RS+ R R
Sbjct: 248 QDGQPGAPGNDGAPGSDAAYCPCPARSAAVFRHR 281
>U80441-7|AAB37655.1| 252|Caenorhabditis elegans Hypothetical
protein F27C1.2a protein.
Length = 252
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 503 IKTERNSSDTCHEIKSHEENSLSRESMLKSRARMART 613
++T R+S TCH+ +H +++ + A +ART
Sbjct: 141 VETTRSSGGTCHQSVTHSQSNKPQSEPFLISASVART 177
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 418 AHVPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
A VP G +A L P +I KWYK+GKE
Sbjct: 4500 AEVPKGKKAVLQVETNKKPKEI----KWYKNGKE 4529
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 424 VPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
VP G+ A ++C +L ++ S++W +DGK+
Sbjct: 3116 VPPGSTATIAC--ELEECELKRSIRWLRDGKD 3145
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 424 VPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
VP G+ A ++C +L ++ S++W +DGK+
Sbjct: 3116 VPPGSTATIAC--ELEECELKRSIRWLRDGKD 3145
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 424 VPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
VP G+ A ++C +L ++ S++W +DGK+
Sbjct: 3116 VPPGSTATIAC--ELEECELKRSIRWLRDGKD 3145
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 418 AHVPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
A VP G +A L P +I KWYK+GKE
Sbjct: 3860 AEVPKGKKAVLQVETNKKPKEI----KWYKNGKE 3889
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 418 AHVPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
A VP G +A L P +I KWYK+GKE
Sbjct: 4500 AEVPKGKKAVLQVETNKKPKEI----KWYKNGKE 4529
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 418 AHVPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
A VP G +A L P +I KWYK+GKE
Sbjct: 4500 AEVPKGKKAVLQVETNKKPKEI----KWYKNGKE 4529
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 418 AHVPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
A VP G +A L P +I KWYK+GKE
Sbjct: 3860 AEVPKGKKAVLQVETNKKPKEI----KWYKNGKE 3889
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 418 AHVPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
A VP G +A L P +I KWYK+GKE
Sbjct: 4500 AEVPKGKKAVLQVETNKKPKEI----KWYKNGKE 4529
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 303 GSASMHLFSKLVSLSPPRHTHFTNQSINFSVHQHHGRFPVRAQLQDTAK 157
G + H K LS PR++ +N+ ++ SV FP+ +Q AK
Sbjct: 120 GGGAAHRRKKHNDLSSPRYSSNSNEDVDGSVFPDMADFPLLDVVQSKAK 168
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 303 GSASMHLFSKLVSLSPPRHTHFTNQSINFSVHQHHGRFPVRAQLQDTAK 157
G + H K LS PR++ +N+ ++ SV FP+ +Q AK
Sbjct: 182 GGGAAHRRKKHNDLSSPRYSSNSNEDVDGSVFPDMADFPLLDVVQSKAK 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,743
Number of Sequences: 27780
Number of extensions: 410313
Number of successful extensions: 1404
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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